View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9256_low_9 (Length: 253)
Name: NF9256_low_9
Description: NF9256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9256_low_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 34850742 - 34850981
Alignment:
| Q |
14 |
agagaacagaagtagaagcatactgtagtttacaaaaatacttggcaatttggaaattgagtggaaacatagtttacaaaatacttggctattgctctat |
113 |
Q |
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| T |
34850742 |
agagaacagaagtagaagcatactgtattttacaaaaatacttgccaatttggaaattgagtggaaacatagtttacaaaatacttggctattgctcaaa |
34850841 |
T |
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| Q |
114 |
aaactttctacattagtcattggctatcaccaataactaatgattgcaatcaatagaaaacagcatttcatttcattgcaataacagttgtaagcctaca |
213 |
Q |
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| T |
34850842 |
aaactttctacattagtcattggctatcaccaataactaatgattgcaatcaatagaaaacagcatttcatttcattgcaataacagttgtaagcctaca |
34850941 |
T |
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| Q |
214 |
aagaaatcaagaaacaaattctttgtatattatgggagta |
253 |
Q |
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| T |
34850942 |
aagaaatcaagaaacaaattctttgtatattatgggagta |
34850981 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 3278196 - 3278122
Alignment:
| Q |
14 |
agagaacagaagtagaagcatactgtagtttacaaaaatacttggcaatttggaaattgagtggaaacatagtttac |
90 |
Q |
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||||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||||||||||||| |
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| T |
3278196 |
agagaacagaagtagaagcatacaatagtttacaaaaat--ttagcaatttagaaattgagtggaaacatagtttac |
3278122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 43437349 - 43437419
Alignment:
| Q |
25 |
gtagaagcatactgtagtttacaaaaatacttggcaatttggaaattgagtggaaacatagtttacaaaat |
95 |
Q |
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|||||||||||| |||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||| |
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| T |
43437349 |
gtagaagcatacaatagtttacgaaaatacatggcaatttaggaattgagtggaaacatagtttacaaaat |
43437419 |
T |
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