View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9257_low_1 (Length: 491)
Name: NF9257_low_1
Description: NF9257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9257_low_1 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Original strand, 27814661 - 27815142
Alignment:
| Q |
10 |
tagataatactgcacgaacatcattagcttaaagatcacatgtcgttttgaacaatatgaagctagggcattggttaactacactccaaatttaaaggtt |
109 |
Q |
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| T |
27814661 |
tagaaaatactgcatggacatcattagcttaaagatcacatgtcgttttgaacaatatgaagctagggcattggttaactacactccaaatttaaaggtt |
27814760 |
T |
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| Q |
110 |
ttgagtattcgaaacatgacagttaacatgggaggtttatgtcatgtaattaataacttggaacatttggaggtggtaaatttaagccatagtcttattg |
209 |
Q |
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| T |
27814761 |
ttgagtattcgaaacatgacagttaacatgggaggtttatgtcatgtacttaataacttggaacatttggaggtggtaaatttaagccatagtcttattg |
27814860 |
T |
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| Q |
210 |
tggataaattggatgatgaacttcaacaatactcggttgatgatgtgctaagtcgtgtcaataacccatgcaagcttatcacttgtcaaattagaacatg |
309 |
Q |
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| T |
27814861 |
tggataaattggatgatgaacttcaacaatactcggttgatgatgtgcaaagtcgtgtcaataactcatgcaagcttatcacttgtcaaattagaacatg |
27814960 |
T |
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| Q |
310 |
cctttggtgcaagactccgtttgcgagaaatccaagaagaatgccacatgggaccttggaagatatttggcgtgatgatgagataaggtctctttcgcat |
409 |
Q |
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| T |
27814961 |
cctttggtgcaagactccatttgcgagaaatccaagaagaatgccacatgggaccttggaagatatttggcgtgatgatgagataaggtctctttcgcat |
27815060 |
T |
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| Q |
410 |
tagttagtccaagaaaactgggttaaagaatgcatggagcttattataaacatttgctcattttgatttagaatcatgtttg |
491 |
Q |
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| T |
27815061 |
tagttagtcctagaaaaatgggttaaagaatgcattgatcttattataaacatttgctcattttgatttagaatcatgtttg |
27815142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 15 - 491
Target Start/End: Original strand, 27806927 - 27807403
Alignment:
| Q |
15 |
aatactgcacgaacatcattagcttaaagatcacatgtcgttttgaacaatatgaagctagggcattggttaactacactccaaatttaaaggttttgag |
114 |
Q |
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||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
27806927 |
aatactgcaagaacattgttagcttaaagatcacaggtggttttgaacaatatgaagctagggcattggttaaatgcactccaaatctaaaggttttgag |
27807026 |
T |
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| Q |
115 |
tattcgaaacatgacagttaacatgggaggtttatgtcatgtaattaataacttggaacatttggaggtggtaaatttaagccatagtcttattgtggat |
214 |
Q |
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| T |
27807027 |
tattcgaaagatgaaagttaacatgggaggtttatgtcacgtgcttaataacttggaacatttggaggtggtaaacttaagccatagtcttattgtggat |
27807126 |
T |
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| Q |
215 |
aaattggatgatgaacttcaacaatactcggttgatgatgtgctaagtcgtgtcaataacccatgcaagcttatcacttgtcaaattagaacatgccttt |
314 |
Q |
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| T |
27807127 |
aaagtggacggtgcgtttcatttatactcgattgatgatgtgctaagtcgtgtcaatatctcatgcaagcttatcacttgtcaaataacaacaagccata |
27807226 |
T |
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| Q |
315 |
ggtgcaagactccgtttgcgagaaatccaagaagaatgccacatgggaccttggaagatatttggcgtgatgatgagataaggtctctttcgcattagtt |
414 |
Q |
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| T |
27807227 |
ggtgcaagaatccatttgcgagaaatccaagaagaatgccacatggatccttggaaaatatttggcgtgaagatgagataagctctctttcacattagtt |
27807326 |
T |
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| Q |
415 |
agtccaagaaaactgggttaaagaatgcatggagcttattataaacatttgctcattttgatttagaatcatgtttg |
491 |
Q |
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| T |
27807327 |
agtcatagtaaaatgtgttaaagattgcatggatcttattataaacattttctcattttgaattagaatcatgtttg |
27807403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 28551251 - 28551203
Alignment:
| Q |
145 |
tttatgtcatgtaattaataacttggaacatttggaggtggtaaattta |
193 |
Q |
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|||||||| |||| |||||| ||| ||||||||||| |||||||||||| |
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| T |
28551251 |
tttatgtcgtgtacttaatagcttagaacatttggatgtggtaaattta |
28551203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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