View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9257_low_2 (Length: 485)

Name: NF9257_low_2
Description: NF9257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9257_low_2
NF9257_low_2
[»] chr5 (4 HSPs)
chr5 (19-259)||(16604230-16604475)
chr5 (82-237)||(17026288-17026447)
chr5 (118-224)||(24840457-24840563)
chr5 (118-167)||(35668724-35668773)
[»] chr2 (4 HSPs)
chr2 (28-259)||(29709666-29709893)
chr2 (70-175)||(28279550-28279655)
chr2 (19-249)||(27867572-27867805)
chr2 (191-259)||(22389807-22389878)
[»] scaffold0043 (2 HSPs)
scaffold0043 (113-259)||(57584-57733)
scaffold0043 (19-127)||(57749-57859)
[»] scaffold1429 (1 HSPs)
scaffold1429 (37-221)||(627-811)
[»] chr7 (2 HSPs)
chr7 (90-231)||(20143003-20143143)
chr7 (90-231)||(19709438-19709573)
[»] chr1 (3 HSPs)
chr1 (19-137)||(74030-74150)
chr1 (73-230)||(23222226-23222381)
chr1 (19-152)||(25131052-25131186)
[»] chr8 (3 HSPs)
chr8 (102-259)||(30545515-30545671)
chr8 (97-209)||(12761736-12761848)
chr8 (114-224)||(16053617-16053727)
[»] chr4 (2 HSPs)
chr4 (82-224)||(1697207-1697349)
chr4 (83-167)||(15788618-15788702)
[»] chr3 (3 HSPs)
chr3 (19-207)||(5633712-5633902)
chr3 (84-231)||(14426341-14426487)
chr3 (145-257)||(9249472-9249587)
[»] chr6 (1 HSPs)
chr6 (83-234)||(15577008-15577159)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 16604230 - 16604475
Alignment:
Q  19 gaacacacttatagaatgaattatagtagaaagagtggaatata---tttgctcaaaattctcactggttatgttatacataattgtaatggtgaatatt 115  Q
    |||||||| | || || ||||||||| || ||||||||||||||   || | |||||||| ||||||||| || ||||||||||||||||||||||| ||    
T  16604230 gaacacacatgtaaaaagaattatagcagtaagagtggaatataaatttggatcaaaatt-tcactggttgtgctatacataattgtaatggtgaatttt 16604328  T
Q  116 tctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctactattaatggttggaataattctctaaga 215  Q
    |||||||||||| || || || | | ||||||||||||| |||||||||||| |||||||  | || ||| || | |||||||||||||||| || ||||    
T  16604329 tctgagtatctttcgtagtaaactccaaaagttatcgtgctcttgaacttcgaaagtaagctagccttctgctgtgaatggttggaataattgtccaaga 16604428  T
Q  216 ctaaaacaatattttt---atttttggaaaaggaaaggttatacaat 259  Q
    |||||||||  |||||   ||||||||||||||||||||||| ||||    
T  16604429 ctaaaacaaattttttgacatttttggaaaaggaaaggttatgcaat 16604475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 237
Target Start/End: Complemental strand, 17026447 - 17026288
Alignment:
Q  82 ggttatgttatacataattgtaatggtgaatatttctg---agtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaa 178  Q
    |||||||||||||| ||||||| |||||| | ||| |    ||||| ||||| ||||||| ||| || |||||||| |||||||||||| |||||||  |    
T  17026447 ggttatgttatacagaattgtagtggtgactttttgttttaagtattttccgcagcaagctctacaaattatcgtgctcttgaacttcgaaagtaagcta 17026348  T
Q  179 accctctactattaatggttggaataattctctaagactaaaac-aatatttttattttt 237  Q
     |||| | |||  |||||||||||| |||||| ||| ||||||| ||| |||||||||||    
T  17026347 gccctatgctaacaatggttggaatgattctccaaggctaaaacaaatttttttattttt 17026288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 24840563 - 24840457
Alignment:
Q  118 tgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctactattaatggttggaataattctctaagact 217  Q
    ||||||||||||| | ||||| | ||||||||||||| ||||||||||| ||||||||  | |||||| ||   |||| |||||| ||||||| ||| ||    
T  24840563 tgagtatcttccgcaacaagctccaaaagttatcgtggtcttgaacttctgaagtaagctagccctctgctgacaatgtttggaacaattctccaaggct 24840464  T
Q  218 aaaacaa 224  Q
    |||||||    
T  24840463 aaaacaa 24840457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 35668773 - 35668724
Alignment:
Q  118 tgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcg 167  Q
    ||||||||||||| |||||||||||| ||||| | |||| ||||||||||    
T  35668773 tgagtatcttccgtagcaagccctaatagttaccatgtttttgaacttcg 35668724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 28 - 259
Target Start/End: Complemental strand, 29709893 - 29709666
Alignment:
Q  28 tatagaatgaattatagtagaaagagtggaatatattt---gctcaaaattctcactggttatgttatacataattgtaatggtgaatatttctgagtat 124  Q
    ||||||| |||||||||| |||||| |||||||||| |   ||||||||| |||| |||||||  |||||| |||||||||| ||||||||| | |||||    
T  29709893 tatagaaagaattatagtcgaaagaatggaatatatatttggctcaaaat-ctcattggttatactatacaaaattgtaatgatgaatattttttagtat 29709795  T
Q  125 cttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctactattaatggttggaataattctctaagactaaaacaa 224  Q
    |||||| | ||| ||| ||||||||||||| |||||||||| | |||||||  | |||||| || |||||||||||||||||||||  ||||||||||||    
T  29709794 cttccgcaacaatccccaaaagttatcgtgctcttgaactttgaaagtaagctagccctctgctgttaatggttggaataattctccgagactaaaacaa 29709695  T
Q  225 tatttttatttttggaaaaggaaaggttatacaat 259  Q
          | |||||||||||||||||||||| ||||    
T  29709694 ------tttttttggaaaaggaaaggttatgcaat 29709666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 28279550 - 28279655
Alignment:
Q  70 aaaattctcactggttatgttatacataattgtaatggtgaatatttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcgga 169  Q
    |||| |||||| |||||||||||| |||||| || | |||||| ||| ||||||||||||||||||||| | |||||||| |||| |||| |||||||||    
T  28279550 aaaaatctcaccggttatgttatagataattatagtagtgaatttttttgagtatcttccggagcaagcaccaaaagttaccgtgctcttaaacttcgga 28279649  T
Q  170 agtaag 175  Q
    ||||||    
T  28279650 agtaag 28279655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 27867572 - 27867805
Alignment:
Q  19 gaacacacttata-gaatgaattatagtagaaagagtggaatatatttg-ctcaaaattctcactggttatgttatacataattg-taatggtgaatatt 115  Q
    |||||||| |||| ||| ||| |||||||||||| | | |||||||||| || ||||| ||||| |||||||||||||| |||||  ||||||||   ||    
T  27867572 gaacacacatatatgaaagaactatagtagaaagtg-gaaatatatttggcttaaaat-ctcaccggttatgttatacaaaattgaaaatggtgaccttt 27867669  T
Q  116 tctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctactattaatggttggaataattctctaaga 215  Q
    | |||||||||| || ||||||||| || |||| | ||| |||||||||| | |||||||    ||||||  | ||||| |||| |||||||||| ||||    
T  27867670 tttgagtatctttcgcagcaagccccaatagttgttgtgctcttgaactt-gaaagtaagctttccctctgatgttaatcgttgaaataattctccaaga 27867768  T
Q  216 ctaaaacaatattttt--attttt-ggaaaaggaaag 249  Q
    ||||||  ||||||||  |||||| ||||||||||||    
T  27867769 ctaaaaatatatttttggatttttcggaaaaggaaag 27867805  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 22389807 - 22389878
Alignment:
Q  191 taatggttggaataattctctaagactaaaacaatattttt---atttttggaaaaggaaaggttatacaat 259  Q
    |||||| ||| |||||||||  ||||||||| ||| |||||   ||||||||||||||||||||||| ||||    
T  22389807 taatgggtgggataattctccgagactaaaataatttttttgagatttttggaaaaggaaaggttatgcaat 22389878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 57733 - 57584
Alignment:
Q  113 atttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctactattaatggttggaataattctcta 212  Q
    |||| |||||||||| || | ||||||| ||||||||||||| ||||||||||||||||||||  |||||| |  | ||||||||||| |||||||||      
T  57733 atttatgagtatcttgcgcaccaagccccaaaagttatcgtgatcttgaacttcggaagtaagctaaccctttgttgttaatggttgggataattctccg 57634  T
Q  213 agactaaaacaatattttt---atttttggaaaaggaaaggttatacaat 259  Q
    ||||||| | ||| |||||   ||||||||||||||||||||||| ||||    
T  57633 agactaacataatttttttgaaatttttggaaaaggaaaggttatgcaat 57584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 57859 - 57749
Alignment:
Q  19 gaacacacttatagaatgaattatagtagaaagagtggaatata---tttgctcaaaattctcactggttatgttatacataattgtaatggtgaatatt 115  Q
    |||||||| ||||||| |||||||||||||||||||||||||||   || |||||||| ||||||||| |||| |||||  |||||||||||||||||||    
T  57859 gaacacacatatagaaagaattatagtagaaagagtggaatatatatttggctcaaaa-tctcactggctatgctataccaaattgtaatggtgaatatt 57761  T
Q  116 tctgagtatctt 127  Q
    | ||||||||||    
T  57760 tatgagtatctt 57749  T

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Target: scaffold1429 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold1429
Description:

Target: scaffold1429; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 627 - 811
Alignment:
Q  37 aattatagtagaaagagtggaatatattt---gctcaaaattctcactggttatgttatacataattgtaatggtgaatatttctgagtatcttccggag 133  Q
    |||||||||||||| |||||||||||| |   ||| ||||| | ||  |||||||||||||| |||||||||||||||||||| || ||||||   | |     
T  627 aattatagtagaaaaagtggaatatatatttggcttaaaatcc-cagcggttatgttatacaaaattgtaatggtgaatatttttgtgtatctggtgcac 725  T
Q  134 caagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctactattaatggttggaataattctctaagactaaaa 221  Q
    |||||||||||||||||  ||||||||||||||| |||||||  | ||||||||| ||||||||||| ||| || ||  |||||||||    
T  726 caagccctaaaagttat--tgttcttgaacttcgaaagtaagctagccctctactgttaatggttgggatatttgtccgagactaaaa 811  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 20143143 - 20143003
Alignment:
Q  90 tatacataattgtaatggtgaatatttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctacta 189  Q
    |||||| | |||| ||||| |||||||| ||||||||||||  |||||||| ||||||||||||| |||||||| || ||||||||  | |||| | ||     
T  20143143 tatacaaagttgtgatggtaaatatttcagagtatcttccgtggcaagccc-aaaagttatcgtgctcttgaacatcagaagtaagcgagccctgtgctg 20143045  T
Q  190 ttaatggttggaataattctctaagactaaaacaatattttt 231  Q
    |||||||||||||||||||| | ||||||||||||| |||||    
T  20143044 ttaatggttggaataattctatgagactaaaacaattttttt 20143003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 19709573 - 19709438
Alignment:
Q  90 tatacataattgtaatggtgaatatttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctacta 189  Q
    |||||| |||||||||||||||||||||||||||| ||||| |||||| |  | ||||||||||| ||||||||||| |||       | ||||||   |    
T  19709573 tatacaaaattgtaatggtgaatatttctgagtattttccgcagcaagtctcagaagttatcgtgctcttgaacttcagaa------tatccctctggca 19709480  T
Q  190 ttaatggttggaataattctctaagactaaaacaatattttt 231  Q
    ||||||||| |||||||||||  |||||||||||| ||||||    
T  19709479 ttaatggttagaataattctccgagactaaaacaaaattttt 19709438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 74030 - 74150
Alignment:
Q  19 gaacacacttatagaatgaattatagtagaaagagtggaatatattt---gctcaaaattctcactggttatgttatacataattgtaatggtgaatatt 115  Q
    |||||||| |||||||  |||| |||||||||||||||||||||| |   ||||||||| |||||| ||||||||||||||||||||  ||||||| |||    
T  74030 gaacacacatatagaaataattgtagtagaaagagtggaatatatatttggctcaaaat-ctcactagttatgttatacataattgtgttggtgaacatt 74128  T
Q  116 tctgagtatcttccggagcaag 137  Q
    | ||||||||||||| ||||||    
T  74129 tttgagtatcttccgcagcaag 74150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 23222381 - 23222226
Alignment:
Q  73 attctcactggttatgttatacataattgtaatggtgaatatttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagt 172  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||  | |||||   ||||| | |||| ||||||||||| | ||||    
T  23222381 attctcactggttatgctatacataattgtaatggtgact-tttctgagtatcttccacaacaagctacaaaagctttcgt-ttcttgaacttagaaagt 23222284  T
Q  173 aagtaaaccctctactattaatggttggaataattctctaagactaaaacaatatttt 230  Q
    |||  |||||||| ||  ||||||||| |||||||| | ||| ||||||||| |||||    
T  23222283 aagctaaccctctgctgataatggttgaaataattcaccaaggctaaaacaaaatttt 23222226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 25131052 - 25131186
Alignment:
Q  19 gaacacacttatagaatgaattatagtagaaagagtggaatata---tttgctcaaaattctcactggttatgttatacataattgtaatggtgaatatt 115  Q
    ||||| || ||| ||| ||||||||| ||||| |||||||||||   || ||||||||| ||||| ||||||| ||||||| ||||||||||||||||||    
T  25131052 gaacatacatatggaaagaattatagaagaaatagtggaatataaatttggctcaaaat-ctcaccggttatgctatacatgattgtaatggtgaatatt 25131150  T
Q  116 tctgagtatcttccggagcaagccctaaaagttatcg 152  Q
    | |||||||| |||| ||||||||| ||||| |||||    
T  25131151 t-tgagtatcatccgcagcaagccccaaaagctatcg 25131186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 30545671 - 30545515
Alignment:
Q  102 taatggtgaatatttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctactattaatggttgga 201  Q
    ||||||||||||||||||||||||||  | || |||||    |||||||||||||||| ||||||||||| ||||   | ||||||| ||||||||||||    
T  30545671 taatggtgaatatttctgagtatcttttgcagtaagcc----aagttatcgtgttcttaaacttcggaaggaagtttcctctctactgttaatggttgga 30545576  T
Q  202 ataattctctaagactaaaacaatattttt---atttttggaaaaggaaaggttatacaat 259  Q
    ||||||||   ||||||||||| | |||||   ||||||| |||| |||||||||| ||||    
T  30545575 ataattcttcgagactaaaacatttttttttagatttttgaaaaaagaaaggttatgcaat 30545515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 12761736 - 12761848
Alignment:
Q  97 aattgtaatggtgaatatttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctactattaatgg 196  Q
    ||||| ||| |||||| ||||| ||||||||||| ||||||||| || |||| ||||| | |||||||||| |||||||  |||||| |  | |||||||    
T  12761736 aattgaaattgtgaatttttctaagtatcttccgcagcaagccccaatagttctcgtgctattgaacttcgaaagtaagccaaccctatgttgttaatgg 12761835  T
Q  197 ttggaataattct 209  Q
    || ||||||||||    
T  12761836 tttgaataattct 12761848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 16053617 - 16053727
Alignment:
Q  114 tttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctactattaatggttggaataattctctaa 213  Q
    |||||||||||||||   ||||||| | |||||||||| || |||||||||||  |||||||  | | |||||||   ||||||| |||||||| || ||    
T  16053617 tttctgagtatcttctacagcaagctccaaaagttatcttgctcttgaacttcaaaagtaagctagctctctactgacaatggttagaataattttccaa 16053716  T
Q  214 gactaaaacaa 224  Q
    |||||||||||    
T  16053717 gactaaaacaa 16053727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 1697207 - 1697349
Alignment:
Q  82 ggttatgttatacataattgtaatggtgaatatttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaacc 181  Q
    ||||||| |||||||||||||| || ||| | ||||||||||||||| | | ||||  ||||||||||||||| |||||||||| |||||||||  ||||    
T  1697207 ggttatgctatacataattgtagtgatgactttttctgagtatcttcagcaacaagttctaaaagttatcgtgctcttgaactttggaagtaagccaacc 1697306  T
Q  182 ctctactattaatggttggaataattctctaagactaaaacaa 224  Q
     ||| ||   |||| |||||| ||||||| || ||||||||||    
T  1697307 ttctgctgacaatgtttggaacaattctccaaaactaaaacaa 1697349  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 15788618 - 15788702
Alignment:
Q  83 gttatgttatacataattgtaatggtgaatatttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcg 167  Q
    |||||| ||||||| |||  |||||| ||| ||||  ||||||||| | | ||||||  || |||||||||||||||||||||||    
T  15788618 gttatgctatacatgattaaaatggttaatttttcaaagtatcttctgcaacaagcctcaatagttatcgtgttcttgaacttcg 15788702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 5633712 - 5633902
Alignment:
Q  19 gaacacacttatagaatgaattatagtagaaagagtggaatatat--ttgctcaaaattctcactggttatgttatacataattgtaatggtgaatattt 116  Q
    |||||||  ||||||| |||||| | ||| ||||||| |||||||  ||| |  ||| |||||| ||||||| |||||||||| ||||||||||||||||    
T  5633712 gaacacagatatagaaagaattagattaggaagagtgcaatatatatttggtttaaaatctcaccggttatgctatacataatggtaatggtgaatattt 5633811  T
Q  117 ctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccctctactattaatggttggaataatt 207  Q
     ||||||||||  | |  |||||| ||||||||||||| || ||||||||  || ||||  | |||| || | ||||||||||||| ||||    
T  5633812 atgagtatcttttgcacaaagccccaaaagttatcgtgctcgtgaacttcacaaataagctagccctatatttttaatggttggaaaaatt 5633902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 84 - 231
Target Start/End: Complemental strand, 14426487 - 14426341
Alignment:
Q  84 ttatgttatacataattgtaatggtgaatatttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccct 183  Q
    ||||| |||||| |||||||||||||| | ||||||||||||||  | ||||||||| ||| ||||  ||| ||||||| ||||||| ||||  | ||||    
T  14426487 ttatgctatacagaattgtaatggtgact-tttctgagtatcttatgtagcaagccccaaacgttactgtgctcttgaagttcggaaataagatatccct 14426389  T
Q  184 ctactattaatggttggaataattctctaagactaaaacaatattttt 231  Q
    || ||   ||||||| ||||||||||  |||||||||||||| |||||    
T  14426388 ctgctgacaatggttagaataattctacaagactaaaacaattttttt 14426341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 9249472 - 9249587
Alignment:
Q  145 agttatcgtgttcttgaacttcggaagtaagtaaaccctctactattaatggttggaataattctctaagactaaaacaatattttt---atttttggaa 241  Q
    |||||| ||| |||||||||| |||||| ||  |  |||||  | |||||||||||||| ||||||| | ||||||||||  |||||   || |||||||    
T  9249472 agttattgtgctcttgaactttggaagttagctagtcctctgatgttaatggttggaatcattctctgaaactaaaacaaattttttggaatatttggaa 9249571  T
Q  242 aaggaaaggttataca 257  Q
    ||||||||||||||||    
T  9249572 aaggaaaggttataca 9249587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 15577008 - 15577159
Alignment:
Q  83 gttatgttatacataattgtaatggtgaatatttctgagtatcttccggagcaagccctaaaagttatcgtgttcttgaacttcggaagtaagtaaaccc 182  Q
    |||||| ||||||||||||||||||||  | ||||||||||||||||  ||||||| | |||| ||||  || ||||||||||  ||||||||  | | |    
T  15577008 gttatgctatacataattgtaatggtgcctttttctgagtatcttccacagcaagctccaaaatttattttgctcttgaactttagaagtaagctagctc 15577107  T
Q  183 tctactattaatggttggaataattctctaagactaaaacaatatttttatt 234  Q
    |||  |   ||||||||||||||||||| ||| |||||||||  ||||||||    
T  15577108 tctggtgacaatggttggaataattctccaagtctaaaacaaattttttatt 15577159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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