View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9257_low_4 (Length: 352)
Name: NF9257_low_4
Description: NF9257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9257_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 39101171 - 39100834
Alignment:
| Q |
1 |
agacaccgatacctgtttgacatcagaacacatctaatccgagaagtgtattttttagattgcaccattttaaaaggtaagaataaaatggttacattag |
100 |
Q |
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| T |
39101171 |
agacatcgatgcctgtctgacatcagaatacacctaatccgagaagtgtattttttagattacaccattttaaagggtaagaataaaatggttacattag |
39101072 |
T |
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| Q |
101 |
tcttatcctatgatgaggtcctttaggtatgaatataatcattgattaatggaatctaaccctgaattagcaacctt-gtgattgtaaa-ataaataaag |
198 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
39101071 |
tcttatactatgatgaggtcctttaggtatgaatataatcattgattaatggaatctaaccctgaattagcaaccttagtgattgtaaatataaataaag |
39100972 |
T |
|
| Q |
199 |
attagacaactaatctggattnnnnnnntaggttcatgggaaatccttccaatccaatctcaaagacatgtatgtagacaaggaggcagagtgtgacccg |
298 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39100971 |
attagacaactaatctggattaaaaaaataggttcatgggaaatccttccaatccaatctcaaagacatgtatgtagacaaggaggcagagtgtgacccg |
39100872 |
T |
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| Q |
299 |
gagtcctaaagattctcttaaaaaattactgttctaag |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
39100871 |
gagtcctaaagattctcttaaaaaattactgttctaag |
39100834 |
T |
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