View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9258_high_1 (Length: 598)
Name: NF9258_high_1
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 124 - 452
Target Start/End: Original strand, 7261098 - 7261428
Alignment:
| Q |
124 |
agggaactctaatggagtatataacgtcattaaaatgtcgattaaaatacagatgacacatgagtgacacgtactctttaatatat--acaagtttttga |
221 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7261098 |
agggaactctaatggggtatataacgtcattaaaatgtccattaaaatacagatgacacatgagtgacacgtactctttaatatatgtacaagtttttga |
7261197 |
T |
|
| Q |
222 |
tgatggttttatagttactgcatacacgaatttagtgtggaagccaactcactacttaagtgtttcatagcaccatttcattaattcagactctgtttat |
321 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7261198 |
tgatggttttatagttaatgcatacacgaatttagtgtggaagccaactcactacttaagtgtttcatagcaccatttcattaattcagactctgtttat |
7261297 |
T |
|
| Q |
322 |
agaaaccaatacgtatgcatccattatgaatgtgagattgtcaactcattcttaaatgatttctgagaaaaggacactacgaaatacttggaagttagaa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7261298 |
agaaaccaatacgtatgcatccattatgaatgtgagattgtcaactcattcttaaatgatttctgagaaaaggacactacgaaatacttggaagttagaa |
7261397 |
T |
|
| Q |
422 |
tattgatatgtttctttcaaaaaaaggttag |
452 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
|
|
| T |
7261398 |
tattcatatgtttctttcaaaaaaaggttag |
7261428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 511 - 589
Target Start/End: Original strand, 7261487 - 7261574
Alignment:
| Q |
511 |
gaaatggccaaaatgaatgaaataatattga---------ttagagggaaaagaagttaccacagtctacttgaaaccaacaccaaac |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7261487 |
gaaatggccaaaatgaatgaaataatattgaaaaattctattagagggaaaagaagttaccacagtctacttgaaaccaacaccaaac |
7261574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 7260997 - 7261064
Alignment:
| Q |
46 |
tttacattgcgactcaaatacaaaatatctaattaaactgatcatctgaattaagtgcttttgggtag |
113 |
Q |
| |
|
|||||||||| |||| ||| |||||| ||| ||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
7260997 |
tttacattgctactcgaattcaaaatctctgattaaactgatcatcagaattaagtgcttttgcgtag |
7261064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University