View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9258_high_11 (Length: 335)
Name: NF9258_high_11
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 45109639 - 45109320
Alignment:
| Q |
1 |
ccatagataaatgtccaagccagatatgatacttgatgcttgactcagatgtgagtccaacaagaggcagaatagaagacattcttgtgactggaaagaa |
100 |
Q |
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| T |
45109639 |
ccatagataattgtccaagccagatatgatacttgatgcttgactcagatgtgagtccaacaagaggcagaatagaagacattcttgtgactggaaagaa |
45109540 |
T |
|
| Q |
101 |
caaaaatgccaaacatatgtttcctatgtaagcaagtctcaaagatacactcctcaactttgcttcccatctattaccaagaccaataatcaatacacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45109539 |
caaaaatgccaaacatatgtttcctatgtaagcaagtctcaaagatacactcctcaactttgcttcccatctattaccaagaccaataatcaatacacca |
45109440 |
T |
|
| Q |
201 |
aattatacaataatctttatttcatgtagtttaacgtattgttgttaacaaaacaaatttaatctaatataatgtgctaagaaaagtttagattatttac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45109439 |
aattatacaataatctttatttcatgtagtttaacgtattgttgttaacaaaacaaatttaatctaatataatgtgctaagaaaagtttagattatttac |
45109340 |
T |
|
| Q |
301 |
attttctcatcttgtttgtg |
320 |
Q |
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|||||||||||||||||||| |
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| T |
45109339 |
attttctcatcttgtttgtg |
45109320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 45126835 - 45126663
Alignment:
| Q |
1 |
ccatagataaatgtccaagccagatatgatacttgatgcttgactcagatgtgagtccaacaagaggcagaatagaagacattcttgtgactggaaagaa |
100 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| || |||||||| |
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| T |
45126835 |
ccatagataattgtccaagccagatatgatatttgatgcttgactcagatgtgagtccaacaagacgcagaatggaagaccctcttgtaaccggaaagaa |
45126736 |
T |
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| Q |
101 |
caaaaatgccaaacatatgtttcctatgtaagcaagtctcaaagatacactcctcaactttgcttcccatcta |
173 |
Q |
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|||||||||| |||||||||||||||||||| | ||||||||| |||||||||| ||||| |||||||||||| |
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| T |
45126735 |
caaaaatgcccaacatatgtttcctatgtaacctagtctcaaaaatacactcctgaacttcgcttcccatcta |
45126663 |
T |
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