View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9258_high_15 (Length: 247)

Name: NF9258_high_15
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9258_high_15
NF9258_high_15
[»] chr1 (2 HSPs)
chr1 (71-238)||(23996777-23996944)
chr1 (153-215)||(42785579-42785641)
[»] chr5 (3 HSPs)
chr5 (135-238)||(27843195-27843298)
chr5 (71-197)||(32251854-32251980)
chr5 (153-215)||(34177448-34177510)
[»] chr3 (3 HSPs)
chr3 (82-209)||(45967269-45967396)
chr3 (153-215)||(23049861-23049923)
chr3 (155-207)||(4740747-4740799)
[»] chr7 (2 HSPs)
chr7 (71-209)||(25107037-25107175)
chr7 (153-215)||(35515875-35515937)
[»] chr4 (4 HSPs)
chr4 (153-207)||(26169516-26169570)
chr4 (153-215)||(32807723-32807785)
chr4 (167-210)||(13136840-13136883)
chr4 (155-209)||(22495664-22495718)
[»] chr2 (1 HSPs)
chr2 (121-215)||(21578958-21579052)
[»] chr8 (1 HSPs)
chr8 (153-207)||(38738170-38738224)
[»] chr6 (1 HSPs)
chr6 (153-207)||(18673110-18673164)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 23996777 - 23996944
Alignment:
Q  71 atagactctctaccaaggacaatctattatgccgtcgggttattgatctagaggctcaatcttatataggaggatgtggttgggtggaatcatcttctca 170  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||  |||| || |||| || ||||||||||||||||   |||||||||||||| ||    
T  23996777 atagactctctaccaaggacaatctattctgtcgtcgagttattgacatagatgcccaatattgtataggaggatgtggtgtcgtggaatcatcttccca 23996876  T
Q  171 gttatttttacattgtaatttgtttggctctgtttggaactatatatatcggtgggtaggtgtatctg 238  Q
     |||||||||| ||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  23996877 cttatttttacgttgtaatttgtttggctttgtttggagctatatttatcggtgggtaggtgtatctg 23996944  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 42785579 - 42785641
Alignment:
Q  153 ggtggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttggaactatat 215  Q
    ||||||| |||||||||| |||||||| ||||||||| | ||||| |||||||||||| ||||    
T  42785579 ggtggaaacatcttctcacttattttttcattgtaatatttttggatctgtttggaaccatat 42785641  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 27843195 - 27843298
Alignment:
Q  135 tataggaggatgtggttgggtggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttggaactatatatatcggtgggtaggtgta 234  Q
    |||||||||||||||   ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27843195 tataggaggatgtggcgaggtggaatcatcttcccacttatttttacattgtaatttatttggctctgtttggaactatatatatcggtgggtaggtgta 27843294  T
Q  235 tctg 238  Q
    ||||    
T  27843295 tctg 27843298  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 32251854 - 32251980
Alignment:
Q  71 atagactctctaccaaggacaatctattatgccgtcgggttattgatctagaggctcaatcttatataggaggatgtggttgggtggaatcatcttctca 170  Q
    ||||||||||||| ||||||||||| ||    || || ||||||||| |||| |||||||||| | ||||||| ||||||| ||||||| ||||||| ||    
T  32251854 atagactctctactaaggacaatcttttccatcggcgagttattgatatagaagctcaatcttgtgtaggagggtgtggtttggtggaaacatcttccca 32251953  T
Q  171 gttatttttacattgtaatttgtttgg 197  Q
     |||||||| ||||||||||| |||||    
T  32251954 tttatttttgcattgtaatttatttgg 32251980  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 34177448 - 34177510
Alignment:
Q  153 ggtggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttggaactatat 215  Q
    ||||||| |||||||||| ||||| || ||||||||||| ||||| || ||||||||||||||    
T  34177448 ggtggaaacatcttctcacttattatttcattgtaatttttttggttcagtttggaactatat 34177510  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 45967396 - 45967269
Alignment:
Q  82 accaaggacaatctattatgccgtcgggttattgatctagaggctcaatcttatataggaggatgtggttgggtggaatcatcttctcagttatttttac 181  Q
    |||||||||||||| ||  | |||||  | |||||| |||| |||||||||| | ||||||| ||||||| ||| ||| ||||| |||| ||||||||||    
T  45967396 accaaggacaatctctttcgtcgtcgaatcattgatgtagaagctcaatcttgtgtaggaggttgtggtttggtcgaaacatctcctcacttatttttac 45967297  T
Q  182 attgtaatttgtttggctctgtttggaa 209  Q
    |||||| ||| ||||||| |||||||||    
T  45967296 attgtagtttatttggctatgtttggaa 45967269  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 23049861 - 23049923
Alignment:
Q  153 ggtggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttggaactatat 215  Q
    |||||||  |||||||||  | ||||||||||||||||||||||| |||||||| ||| ||||    
T  23049861 ggtggaaatatcttctcacctttttttacattgtaatttgtttgggtctgtttgaaaccatat 23049923  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 4740747 - 4740799
Alignment:
Q  155 tggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttgg 207  Q
    |||||||||||   || |||||||||||||||||||| ||||| |||||||||    
T  4740747 tggaatcatctcaacacttatttttacattgtaatttttttggatctgtttgg 4740799  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 25107175 - 25107037
Alignment:
Q  71 atagactctctaccaaggacaatctattatgccgtcgggttattgatctagaggctcaatcttatataggaggatgtggttgggtggaatcatcttctca 170  Q
    ||||||| || |||||||||||||| ||  | |||||  | |||||| |||| |||||||||| | ||||||| ||||||| ||| ||| ||||| | ||    
T  25107175 atagactatcgaccaaggacaatctctttcgtcgtcgaatcattgatgtagaagctcaatcttgtgtaggaggttgtggtttggtcgaaacatctccaca 25107076  T
Q  171 gttatttttacattgtaatttgtttggctctgtttggaa 209  Q
     ||||||||||| |||||||| ||||||| |||||||||    
T  25107075 cttatttttacactgtaatttatttggctgtgtttggaa 25107037  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 35515875 - 35515937
Alignment:
Q  153 ggtggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttggaactatat 215  Q
    ||||||| ||||||||||  | ||||||||||||| ||||||||||||| |||||||| ||||    
T  35515875 ggtggaaacatcttctcacctttttttacattgtattttgtttggctctatttggaaccatat 35515937  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 26169570 - 26169516
Alignment:
Q  153 ggtggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttgg 207  Q
    ||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||    
T  26169570 ggtggaaacatattctcacttatttttacattgtaatttatttggctctgtttgg 26169516  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 32807785 - 32807723
Alignment:
Q  153 ggtggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttggaactatat 215  Q
    ||||||| ||| |||||| |||||||||||||||||| | ||||| |||||||||||| ||||    
T  32807785 ggtggaaacatattctcacttatttttacattgtaatgtttttgggtctgtttggaaccatat 32807723  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 13136840 - 13136883
Alignment:
Q  167 ctcagttatttttacattgtaatttgtttggctctgtttggaac 210  Q
    |||| |||||||||||||||||| | ||||||||||||||||||    
T  13136840 ctcatttatttttacattgtaatctttttggctctgtttggaac 13136883  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 22495718 - 22495664
Alignment:
Q  155 tggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttggaa 209  Q
    ||||| ||||||||||  |||||||||||||| |||| ||||| |||||||||||    
T  22495718 tggaaacatcttctcatctatttttacattgtgatttttttggttctgtttggaa 22495664  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 21579052 - 21578958
Alignment:
Q  121 gaggctcaatcttatataggaggatgtggttgggtggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttggaactatat 215  Q
    ||||||||||||| | ||||||| || || | ||| ||| ||||||| || |||||||||||||||| ||| | ||||| |||||||||| ||||    
T  21579052 gaggctcaatcttgtgtaggaggttgcggcttggtagaaacatcttcacacttatttttacattgtagtttctatggctgtgtttggaaccatat 21578958  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 38738170 - 38738224
Alignment:
Q  153 ggtggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttgg 207  Q
    ||||||| ||||||| || ||||| |||||||||  |||||||||||||||||||    
T  38738170 ggtggaaacatcttcacacttattgttacattgttctttgtttggctctgtttgg 38738224  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 18673110 - 18673164
Alignment:
Q  153 ggtggaatcatcttctcagttatttttacattgtaatttgtttggctctgtttgg 207  Q
    ||||||| ||||||| || ||||| |||||||||  |||||||||||||||||||    
T  18673110 ggtggaaacatcttcacacttattgttacattgttctttgtttggctctgtttgg 18673164  T

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