View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9258_high_8 (Length: 405)
Name: NF9258_high_8
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 24 - 391
Target Start/End: Original strand, 3082122 - 3082491
Alignment:
| Q |
24 |
atattttactatatgaactacgagacagacaaaccaaccctattttaatcaacctatagaaaattacctaacgttttattttatttaccaataagtaaat |
123 |
Q |
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| T |
3082122 |
atattttactatatgaactacgagacaaacaaaccaaccctattttaatcaacctatagaaaattacctaaggttttattttatttaccaataagtaaat |
3082221 |
T |
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| Q |
124 |
gttgctagcaattggaaaaggtgtaaaactnnnnnnnnn--tcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagc |
221 |
Q |
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| T |
3082222 |
gttgctagcaattggaaaaggtgtaaaactaataaaaaaaatcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagc |
3082321 |
T |
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| Q |
222 |
accaatcatatccttctatgattacatcataattggtggtggcactgcagggtgtcctttggctgcaacactgtcccaaaatcatagggttttggtgctt |
321 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082322 |
accaatcatatcctactatgattacatcatagttggtggtggcaccgcagggtgtcctttggctgcaacactgtcccaaaatcatagggttttggtgctt |
3082421 |
T |
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| Q |
322 |
gaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctatggtgttccactctctg |
391 |
Q |
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| T |
3082422 |
gaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctatggtgttccactctctg |
3082491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 51 - 391
Target Start/End: Original strand, 3090505 - 3090847
Alignment:
| Q |
51 |
gacaaaccaaccctattttaatcaacctatagaaaattacctaacgttttattttatttaccaataagtaaatgttgctagcaattggaaaaggtgtaaa |
150 |
Q |
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| T |
3090505 |
gacaaaccaaacatatattaatcaacctatagaacattacctagggttttattttatttaccaataaataaatgttgctagcaattggaaaaggtgtaaa |
3090604 |
T |
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| Q |
151 |
actnnnnnnnnn--tcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatccttctatgattacat |
248 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3090605 |
actaataaaaaaaatcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatccttctatgattacat |
3090704 |
T |
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| Q |
249 |
cataattggtggtggcactgcagggtgtcctttggctgcaacactgtcccaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaat |
348 |
Q |
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| T |
3090705 |
cataattggtggtggcactgcagggtgtcctttggctgcaacactgtccaaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaat |
3090804 |
T |
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| Q |
349 |
ccaaacataaccaatttaagtgcctatggtgttccactctctg |
391 |
Q |
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| T |
3090805 |
ccaaacataaccaatttaagtgcctttggtgttgcactttctg |
3090847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 5499448 - 5499501
Alignment:
| Q |
238 |
tatgattacatcataattggtggtggcactgcagggtgtcctttggctgcaaca |
291 |
Q |
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||||||||||| ||| | || ||||| ||||||||||||||||| ||||||||| |
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| T |
5499448 |
tatgattacataatagtgggaggtggaactgcagggtgtcctttagctgcaaca |
5499501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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