View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9258_low_1 (Length: 881)

Name: NF9258_low_1
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9258_low_1
NF9258_low_1
[»] chr1 (10 HSPs)
chr1 (173-871)||(51376501-51377199)
chr1 (35-149)||(51376389-51376503)
chr1 (309-446)||(51380803-51380940)
chr1 (763-809)||(20009870-20009916)
chr1 (763-809)||(24195928-24195974)
chr1 (525-610)||(3967868-3967952)
chr1 (615-690)||(20993654-20993726)
chr1 (615-688)||(52004506-52004576)
chr1 (763-809)||(24766061-24766107)
chr1 (627-686)||(42871981-42872037)
[»] chr8 (4 HSPs)
chr8 (501-610)||(26278528-26278636)
chr8 (615-689)||(38567725-38567796)
chr8 (763-809)||(43265663-43265709)
chr8 (538-608)||(20189739-20189809)
[»] chr4 (12 HSPs)
chr4 (611-686)||(11945185-11945257)
chr4 (612-690)||(2469339-2469414)
chr4 (615-690)||(41055147-41055219)
chr4 (620-690)||(7199617-7199684)
chr4 (612-654)||(49812065-49812107)
chr4 (615-690)||(37517128-37517200)
chr4 (615-690)||(37521344-37521416)
chr4 (615-690)||(55682394-55682466)
chr4 (612-690)||(374617-374692)
chr4 (611-655)||(11945095-11945139)
chr4 (503-582)||(48197279-48197358)
chr4 (612-655)||(48236500-48236543)
[»] chr5 (5 HSPs)
chr5 (612-690)||(17731548-17731623)
chr5 (612-688)||(41992695-41992768)
chr5 (525-609)||(41992791-41992875)
chr5 (553-610)||(34114028-34114085)
chr5 (615-690)||(37369318-37369390)
[»] chr7 (11 HSPs)
chr7 (763-812)||(37068170-37068219)
chr7 (615-690)||(43614147-43614219)
chr7 (615-690)||(46066866-46066938)
chr7 (703-804)||(37068193-37068296)
chr7 (763-809)||(4554282-4554328)
chr7 (615-690)||(11591831-11591903)
chr7 (615-690)||(33516112-33516184)
chr7 (620-690)||(48827191-48827258)
chr7 (614-690)||(37068411-37068484)
chr7 (538-608)||(44274251-44274321)
chr7 (559-609)||(46066789-46066839)
[»] chr3 (6 HSPs)
chr3 (615-690)||(39759741-39759813)
chr3 (615-690)||(43823144-43823216)
chr3 (538-610)||(9688935-9689007)
chr3 (503-609)||(53285932-53286038)
chr3 (612-690)||(53286065-53286140)
chr3 (559-609)||(39759841-39759891)
[»] chr2 (3 HSPs)
chr2 (615-690)||(33458044-33458116)
chr2 (620-688)||(34478621-34478686)
chr2 (513-610)||(6892953-6893050)
[»] chr6 (3 HSPs)
chr6 (626-688)||(3288181-3288240)
chr6 (612-690)||(11843614-11843689)
chr6 (525-610)||(8365942-8366027)
[»] scaffold0368 (1 HSPs)
scaffold0368 (627-686)||(8551-8607)
[»] scaffold0311 (1 HSPs)
scaffold0311 (525-586)||(1532-1593)


Alignment Details
Target: chr1 (Bit Score: 603; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 173 - 871
Target Start/End: Original strand, 51376501 - 51377199
Alignment:
Q  173 attccagagatgatatagggcatattgcattaggcttaaacgccttacaaagttacccatcatcacaagtaaatgagacaaactgataaaatacgcaagg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  51376501 attccagagatgatatagggcatattgcattaggcttaaacgccttacaaagttacccatcatcacaagtaaatgagacaaactcataaaatacgcaagg 51376600  T
Q  273 tacatatttttaactttcaagcatttgacattaatctttaagttttgagcatcaaacattaaatttgtaattatcaaatacgcattgtgaccacattgat 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  51376601 tacatatttttaactttcaagcatttgacattaatctttaagtttcgagcatcaaacattaaatttgtaattatcaaatacgcattgtgaccgcattgat 51376700  T
Q  373 gtctctcaaagctctcctaactttcattaagaaccgcatgcaagataaaatttgatttgttcagttcataatatgagaaatgattgcttggagacaaatc 472  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51376701 gtctctcaaagctctcctaactttcattaagaaccgcgtgcaagataaaatttgattcgttcagttcataatatgagaaatgattgcttggagacaaatc 51376800  T
Q  473 caatcnnnnnnntctgggcacactcctatcttgtcaaaggggaaatgcagcccggccatcccaaaaattggtgcggcgcaggagcagggcgcatagaggg 572  Q
    |||||       ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51376801 caatcaaaaaaatctgggcacactcctatcttgtcaaagaggaaatgcagcctggccatcccaaaaattggtgcggcgcaggagcagggcgcatagaggg 51376900  T
Q  573 cgctatttcggtggcgcgaacactaatacatttaataccaaatactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaat 672  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||    
T  51376901 agctatttcggtggcgcgaacactaatacatttaataccaaatactgaaataccttaaatattactcaaaattcatgaagtatcattcataagttgaaat 51377000  T
Q  673 aaaagccacaagtcttaaatnnnnnnnnnggttcaagaatcatgaaaatcttcatcactttcctccaccactagagttgtgcatgtgctcctcttcattc 772  Q
    ||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51377001 aaaagccacaagtcttaaataaaaaaaaaggttcaagaatcatgaaaatcttcatcactttcctccaccactagagttgtgcatgtgctcctcttcattc 51377100  T
Q  773 tcttccttttcatcctctttttcttcatcctcccaattaacgaattctagatcatgaacatattcatcatctaccagactaccaccactatctctgctt 871  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51377101 tcttccttttcatcctctttttcttcatcctcccaattaacgaattctagatcatgaacatattcatcatctaccagactaccaccactatctttgctt 51377199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 51376389 - 51376503
Alignment:
Q  35 aagataccagtgccaaagccatatggaccaccctttttggataatatttgtttactttccaatgacccaagcttctcttaccaagccattgaaatttgaa 134  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  51376389 aagataccagtgccaaagccatatggaccaccctttttggatattatttgtttactttccaatggcccaagcttctcttactaagccattgaaatttgaa 51376488  T
Q  135 tgcctaaatcagatt 149  Q
    |||||||||||||||    
T  51376489 tgcctaaatcagatt 51376503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 309 - 446
Target Start/End: Original strand, 51380803 - 51380940
Alignment:
Q  309 tttaagttttgagcatcaaacattaaatttgtaattatcaaatacgcattgtgaccacattgatgtctctcaaagctctcctaactttcattaagaaccg 408  Q
    ||||| ||||| | |||||| |||||||||  |||| | |||||  |||| ||||||| ||| |||||||||||||||||||||| || ||||||||||     
T  51380803 tttaacttttgtgtatcaaaaattaaattttaaatttttaaatattcattttgaccaccttggtgtctctcaaagctctcctaacctttattaagaacca 51380902  T
Q  409 catgcaagataaaatttgatttgttcagttcataatat 446  Q
    ||| || || |||||||||| |||||||||||||||||    
T  51380903 catccatgacaaaatttgatatgttcagttcataatat 51380940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 809
Target Start/End: Original strand, 20009870 - 20009916
Alignment:
Q  763 ctcttcattctcttccttttcatcctctttttcttcatcctcccaat 809  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  20009870 ctcttcattttcttcctcttcatcctctttttcttcatccccccaat 20009916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 809
Target Start/End: Complemental strand, 24195974 - 24195928
Alignment:
Q  763 ctcttcattctcttccttttcatcctctttttcttcatcctcccaat 809  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  24195974 ctcttcattttcttcctcttcatcctctttttcttcatccccccaat 24195928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 610
Target Start/End: Complemental strand, 3967952 - 3967868
Alignment:
Q  525 cggccatcccaaaaattggtgcggcgcaggagcagggcgcatagagggcgctatttcggtggcgcgaacactaatacatttaatac 610  Q
    |||||| |||||||||||||||||||  ||||  || ||| ||| |||||||||||  |||||||| ||||||||| |||||||||    
T  3967952 cggccaccccaaaaattggtgcggcgagggagtgggtcgcgtagcgggcgctattt-tgtggcgcggacactaatatatttaatac 3967868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 20993654 - 20993726
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||||||||||||||||||||   || | | |||||||||||| ||||||||||||    
T  20993654 tactaaaataccttaaacattactcaaaattcatgaagtat---tccttatttgaaataaaagtcacaagtcttaa 20993726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 688
Target Start/End: Original strand, 52004506 - 52004576
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtctt 688  Q
    |||| ||||| |||||||| ||||||| |||||||||||   |||| ||| |||||||||||| ||||||||||    
T  52004506 tactaaaataccttaaacattactcaagattcatgaagt---attcctaatttgaaataaaagtcacaagtctt 52004576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 763 - 809
Target Start/End: Complemental strand, 24766107 - 24766061
Alignment:
Q  763 ctcttcattctcttccttttcatcctctttttcttcatcctcccaat 809  Q
    ||||||||| ||||||| ||| |||||||||||||||||| ||||||    
T  24766107 ctcttcattttcttcctcttcttcctctttttcttcatccccccaat 24766061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 686
Target Start/End: Original strand, 42871981 - 42872037
Alignment:
Q  627 ttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtc 686  Q
    ||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||    
T  42871981 ttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtc 42872037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 501 - 610
Target Start/End: Original strand, 26278528 - 26278636
Alignment:
Q  501 tcttgtcaaaggggaaatgcagcccggccatcccaaaaattggtgcggcgcaggagcagggcgcatagagggcgctatttcggtggcgcgaacactaata 600  Q
    ||||||||||| |||||||| || |||||| ||||| |||||||| ||||| ||||| |||||||||| |||||||||||  ||| | |||| |||||||    
T  26278528 tcttgtcaaagcggaaatgcggcacggccaccccaagaattggtgtggcgcgggagcggggcgcatagcgggcgctattt-tgtgacacgaaaactaata 26278626  T
Q  601 catttaatac 610  Q
     |||||||||    
T  26278627 tatttaatac 26278636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 615 - 689
Target Start/End: Complemental strand, 38567796 - 38567725
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtctta 689  Q
    |||| ||||| |||||||| |||||||||||||||||||   |||| ||| |||||||||||| |||||||||||    
T  38567796 tactaaaataccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtctta 38567725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 809
Target Start/End: Original strand, 43265663 - 43265709
Alignment:
Q  763 ctcttcattctcttccttttcatcctctttttcttcatcctcccaat 809  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  43265663 ctcttcattttcttcctcttcatcctctttttcttcatccccccaat 43265709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 538 - 608
Target Start/End: Original strand, 20189739 - 20189809
Alignment:
Q  538 aattggtgcggcgcaggagcagggcgcatagagggcgctatttcggtggcgcgaacactaatacatttaat 608  Q
    |||||| |||| || ||||| |||||| |||  |||||||||||||||| ||| ||||||||| |||||||    
T  20189739 aattggcgcggtgcgggagcggggcgcgtagcaggcgctatttcggtggtgcggacactaataaatttaat 20189809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 611 - 686
Target Start/End: Original strand, 11945185 - 11945257
Alignment:
Q  611 caaatactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtc 686  Q
    |||||||| ||||| |||||||| |||||||||||||||||||   |||||||| | |||||||||||||||||||    
T  11945185 caaatactaaaataccttaaacattactcaaaattcatgaagt---attcataattcgaaataaaagccacaagtc 11945257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 612 - 690
Target Start/End: Complemental strand, 2469414 - 2469339
Alignment:
Q  612 aaatactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    ||||||| ||||| |||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||||||    
T  2469414 aaatactaaaatatcttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtcttaa 2469339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 41055147 - 41055219
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||||||    
T  41055147 tactaaaataccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtcttaa 41055219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 690
Target Start/End: Complemental strand, 7199684 - 7199617
Alignment:
Q  620 aaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    ||||| |||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||||||    
T  7199684 aaataccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtcttaa 7199617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 654
Target Start/End: Complemental strand, 49812107 - 49812065
Alignment:
Q  612 aaatactgaaataacttaaacagtactcaaaattcatgaagta 654  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  49812107 aaatactaaaataacttaaacattactcaaaattcatgaagta 49812065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 37517128 - 37517200
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||||||||||||||||||   |||| ||| || ||||||||| ||||||||||||    
T  37517128 tactaaaataccttaaacattactcaaaattcatgaagt---attcctaatttaaaataaaagtcacaagtcttaa 37517200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 37521344 - 37521416
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||||||||||||||||||   |||| ||| || ||||||||| ||||||||||||    
T  37521344 tactaaaataccttaaacattactcaaaattcatgaagt---attcctaatttaaaataaaagtcacaagtcttaa 37521416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 690
Target Start/End: Complemental strand, 55682466 - 55682394
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||||||||||||||||||   |||| ||| ||||||||||||  |||||||||||    
T  55682466 tactaaaataccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagttacaagtcttaa 55682394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 612 - 690
Target Start/End: Original strand, 374617 - 374692
Alignment:
Q  612 aaatactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    ||||||| ||||  |||||||| |||||||||||||||||||   |||| ||| |||||||||||| |||||| |||||    
T  374617 aaatactaaaattccttaaacattactcaaaattcatgaagt---attcttaatttgaaataaaagtcacaagccttaa 374692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 611 - 655
Target Start/End: Original strand, 11945095 - 11945139
Alignment:
Q  611 caaatactgaaataacttaaacagtactcaaaattcatgaagtat 655  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||    
T  11945095 caaatactaaaataccttaaacattactcaaaattcatgaagtat 11945139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 582
Target Start/End: Complemental strand, 48197358 - 48197279
Alignment:
Q  503 ttgtcaaaggggaaatgcagcccggccatcccaaaaattggtgcggcgcaggagcagggcgcatagagggcgctatttcg 582  Q
    ||||||| | |||||||| || |||||| |||||||||||  |||| || ||||| ||| || |||||||||||||||||    
T  48197358 ttgtcaatgcggaaatgcggcgcggccaacccaaaaattgacgcggtgcgggagcggggggcgtagagggcgctatttcg 48197279  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 655
Target Start/End: Complemental strand, 48236543 - 48236500
Alignment:
Q  612 aaatactgaaataacttaaacagtactcaaaattcatgaagtat 655  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||    
T  48236543 aaatactaaaataccttaaacattactcaaaattcatgaagtat 48236500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 612 - 690
Target Start/End: Complemental strand, 17731623 - 17731548
Alignment:
Q  612 aaatactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    ||||||| ||||| |||||||| ||||||||| ||||||||   ||||||||| ||||||||||| |||||||||||||    
T  17731623 aaatactaaaatatcttaaacattactcaaaagtcatgaag---cattcataatttgaaataaaaaccacaagtcttaa 17731548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 688
Target Start/End: Complemental strand, 41992768 - 41992695
Alignment:
Q  612 aaatactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtctt 688  Q
    ||||||| ||||  |||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||||    
T  41992768 aaatactaaaattccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtctt 41992695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 609
Target Start/End: Complemental strand, 41992875 - 41992791
Alignment:
Q  525 cggccatcccaaaaattggtgcggcgcaggagcagggcgcatagagggcgctatttcggtggcgcgaacactaatacatttaata 609  Q
    |||||| |||||||||||  ||||||| ||    |||||| ||| |||||||||||||||| |||| ||||||||| ||||||||    
T  41992875 cggccaccccaaaaattgacgcggcgcggggtgcgggcgcgtagcgggcgctatttcggtgacgcggacactaatatatttaata 41992791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 610
Target Start/End: Complemental strand, 34114085 - 34114028
Alignment:
Q  553 ggagcagggcgcatagagggcgctatttcggtggcgcgaacactaatacatttaatac 610  Q
    |||||||||||| ||| ||||||||||||||||| | |  |||||||| |||||||||    
T  34114085 ggagcagggcgcgtagcgggcgctatttcggtggtgtggccactaataaatttaatac 34114028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 37369318 - 37369390
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||| ||||||||||||||   |||| ||| |||||||||||  ||||||||||||    
T  37369318 tactaaaataccttaaacattacttaaaattcatgaagt---attcctaatttgaaataaaattcacaagtcttaa 37369390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 763 - 812
Target Start/End: Complemental strand, 37068219 - 37068170
Alignment:
Q  763 ctcttcattctcttccttttcatcctctttttcttcatcctcccaattaa 812  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  37068219 ctcttcaaactcttcctcttcatcctctttttcttcatcctcccaattaa 37068170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 615 - 690
Target Start/End: Complemental strand, 43614219 - 43614147
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||||||    
T  43614219 tactaaaataccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtcttaa 43614147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 46066866 - 46066938
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||||||    
T  46066866 tactaaaataccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtcttaa 46066938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 703 - 804
Target Start/End: Complemental strand, 37068296 - 37068193
Alignment:
Q  703 gttcaagaatcatgaaaatcttcatcact--ttcctccaccactagagttgtgcatgtgctcctcttcattctcttccttttcatcctctttttcttcat 800  Q
    |||||| ||||||||||||||||||||    |||||||||||||||||| |||||  ||||| ||||||| ||||| || ||||  |||||  |||||||    
T  37068296 gttcaataatcatgaaaatcttcatcatcgcttcctccaccactagagtggtgcacatgctcttcttcatcctctttctcttcaaactcttcctcttcat 37068197  T
Q  801 cctc 804  Q
    ||||    
T  37068196 cctc 37068193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 809
Target Start/End: Original strand, 4554282 - 4554328
Alignment:
Q  763 ctcttcattctcttccttttcatcctctttttcttcatcctcccaat 809  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  4554282 ctcttcattttcttcctcttcatcctctttttcttcatccccccaat 4554328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 690
Target Start/End: Complemental strand, 11591903 - 11591831
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||||||||||||||||||   |||| ||| |||||||||||| || |||||||||    
T  11591903 tactaaaataccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcataagtcttaa 11591831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 33516112 - 33516184
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| ||||||||  ||||||||||||||||||   |||| ||| |||||||||||| ||||||||||||    
T  33516112 tactaaaataccttaaacatcactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtcttaa 33516184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 690
Target Start/End: Complemental strand, 48827258 - 48827191
Alignment:
Q  620 aaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    ||||| |||||||| |||||||||||||| ||||   |||| ||| |||||||||||| ||||||||||||    
T  48827258 aaataccttaaacattactcaaaattcattaagt---attcctaatttgaaataaaagtcacaagtcttaa 48827191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 614 - 690
Target Start/End: Complemental strand, 37068484 - 37068411
Alignment:
Q  614 atactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    ||||| ||||| |||||||| || |||||| |||||||||||   |||||| ||||||||||| ||| |||||||||    
T  37068484 atactaaaataccttaaacattaatcaaaaatcatgaagtat---tcataatttgaaataaaaaccataagtcttaa 37068411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 538 - 608
Target Start/End: Original strand, 44274251 - 44274321
Alignment:
Q  538 aattggtgcggcgcaggagcagggcgcatagagggcgctatttcggtggcgcgaacactaatacatttaat 608  Q
    |||||| |||| || ||||| |||||| |||  |||||||||||||||| ||| ||||||||| |||||||    
T  44274251 aattggcgcggtgcgggagcggggcgcgtagcaggcgctatttcggtggtgcggacactaataaatttaat 44274321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 609
Target Start/End: Original strand, 46066789 - 46066839
Alignment:
Q  559 gggcgcatagagggcgctatttcggtggcgcgaacactaatacatttaata 609  Q
    |||||| ||| |||||||||||||||| |||| ||||||||| ||||||||    
T  46066789 gggcgcgtagcgggcgctatttcggtgacgcggacactaatatatttaata 46066839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 615 - 690
Target Start/End: Complemental strand, 39759813 - 39759741
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||||||    
T  39759813 tactaaaataccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtcttaa 39759741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 43823144 - 43823216
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||||||    
T  43823144 tactaaaataccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtcttaa 43823216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 610
Target Start/End: Original strand, 9688935 - 9689007
Alignment:
Q  538 aattggtgcggcgcaggagcagggcgcatagagggcgctatttcggtggcgcgaacactaatacatttaatac 610  Q
    |||||| |||| |||||||| |||||| ||| ||||||||||| ||||| |||| |||||||| |||||||||    
T  9688935 aattggcgcggtgcaggagcggggcgcgtagcgggcgctattttggtggtgcgaccactaataaatttaatac 9689007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 609
Target Start/End: Original strand, 53285932 - 53286038
Alignment:
Q  503 ttgtcaaaggggaaatgcagcccggccatcccaaaaattggtgcggcgcaggagcagggcgcatagagggcgctatttcggtggcgcgaacactaataca 602  Q
    ||||||| | ||||||||||||||||   ||| |||||||  ||||||| |||   || ||| ||| ||||||||||||||| ||||| ||||||||| |    
T  53285932 ttgtcaatgcggaaatgcagcccggcagcccctaaaattgacgcggcgcgggatgcggacgcgtagcgggcgctatttcggttgcgcggacactaatata 53286031  T
Q  603 tttaata 609  Q
    |||||||    
T  53286032 tttaata 53286038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 612 - 690
Target Start/End: Original strand, 53286065 - 53286140
Alignment:
Q  612 aaatactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    ||||||| ||||| |||||||| |||||||||||||| ||||   |||| ||| |||||||||||  ||||||||||||    
T  53286065 aaatactaaaataccttaaacattactcaaaattcattaagt---attcttaatttgaaataaaaatcacaagtcttaa 53286140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 609
Target Start/End: Complemental strand, 39759891 - 39759841
Alignment:
Q  559 gggcgcatagagggcgctatttcggtggcgcgaacactaatacatttaata 609  Q
    |||| ||||| |||||||||||||||| |||| ||||||||| ||||||||    
T  39759891 gggcacatagcgggcgctatttcggtgacgcggacactaatatatttaata 39759841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 33458044 - 33458116
Alignment:
Q  615 tactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    |||| ||||| |||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||||||    
T  33458044 tactaaaataccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtcttaa 33458116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 620 - 688
Target Start/End: Original strand, 34478621 - 34478686
Alignment:
Q  620 aaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtctt 688  Q
    ||||| |||||||| |||||||||||||||||||   |||| ||| |||||||||||| || |||||||    
T  34478621 aaataccttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcataagtctt 34478686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 610
Target Start/End: Complemental strand, 6893050 - 6892953
Alignment:
Q  513 ggaaatgcagcccggccatcccaaaaattggtgcggcgcaggagcagggcgcatagagggcgctatttcggtggcgcgaacactaatacatttaatac 610  Q
    |||||||| || |||||| ||||| |||||| |||| |||||||| |||||    | ||||||||||||||||| | |  |||||||| |||||||||    
T  6893050 ggaaatgcggcgcggccaacccaataattggcgcggtgcaggagcggggcgttgtgcgggcgctatttcggtggtgtggccactaataaatttaatac 6892953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 626 - 688
Target Start/End: Original strand, 3288181 - 3288240
Alignment:
Q  626 cttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtctt 688  Q
    |||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||||    
T  3288181 cttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtctt 3288240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 612 - 690
Target Start/End: Complemental strand, 11843689 - 11843614
Alignment:
Q  612 aaatactgaaataacttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 690  Q
    ||||||| ||||| |||||||| |||||||||||||| ||||   |||| ||| |||||||||||  ||||||||||||    
T  11843689 aaatactaaaataccttaaacattactcaaaattcattaagt---attcttaatttgaaataaaattcacaagtcttaa 11843614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 610
Target Start/End: Original strand, 8365942 - 8366027
Alignment:
Q  525 cggccatcccaaaaattggtgcggcgcaggagcagggcgcatagagggcgctatttcggtggcgcgaacactaatacatttaatac 610  Q
    |||||| || || |||||| |||| || |||||||||||  ||| ||||||||||||||||| | |  |||||||| |||||||||    
T  8365942 cggccaacctaataattggcgcggtgcgggagcagggcgtgtagcgggcgctatttcggtggtgtggccactaataaatttaatac 8366027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 686
Target Start/End: Complemental strand, 8607 - 8551
Alignment:
Q  627 ttaaacagtactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtc 686  Q
    ||||||| |||||||||||||||||||   |||| ||| |||||||||||| ||||||||    
T  8607 ttaaacattactcaaaattcatgaagt---attcctaatttgaaataaaagtcacaagtc 8551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 586
Target Start/End: Complemental strand, 1593 - 1532
Alignment:
Q  525 cggccatcccaaaaattggtgcggcgcaggagcagggcgcatagagggcgctatttcggtgg 586  Q
    |||||| ||||| ||||||||||| |||||||| ||| |  ||| |||||||||||||||||    
T  1593 cggccaacccaataattggtgcggtgcaggagcggggtgtgtagcgggcgctatttcggtgg 1532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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