View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9258_low_10 (Length: 486)

Name: NF9258_low_10
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9258_low_10
NF9258_low_10
[»] chr4 (30 HSPs)
chr4 (103-474)||(24738226-24738596)
chr4 (20-104)||(11702341-11702425)
chr4 (20-100)||(10386213-10386293)
chr4 (21-93)||(10248096-10248168)
chr4 (20-100)||(18860047-18860127)
chr4 (20-93)||(17670581-17670654)
chr4 (21-92)||(33927248-33927320)
chr4 (21-71)||(3720636-3720686)
chr4 (21-71)||(12786398-12786448)
chr4 (21-93)||(15429618-15429692)
chr4 (21-93)||(15436232-15436306)
chr4 (21-71)||(19820990-19821040)
chr4 (21-66)||(37103009-37103054)
chr4 (21-70)||(52006318-52006367)
chr4 (21-69)||(19827697-19827745)
chr4 (21-70)||(3797611-3797661)
chr4 (21-93)||(15445127-15445201)
chr4 (21-70)||(15811932-15811982)
chr4 (21-71)||(35510267-35510317)
chr4 (21-70)||(56199129-56199179)
chr4 (21-70)||(5681702-5681751)
chr4 (21-71)||(26060778-26060829)
chr4 (21-59)||(11649257-11649295)
chr4 (21-70)||(15404878-15404928)
chr4 (21-71)||(40795288-40795338)
chr4 (21-76)||(37739551-37739607)
chr4 (21-71)||(1388144-1388194)
chr4 (27-76)||(8871495-8871545)
chr4 (21-93)||(18911782-18911853)
chr4 (21-70)||(56195802-56195852)
[»] chr6 (22 HSPs)
chr6 (20-93)||(34502621-34502694)
chr6 (20-100)||(5617976-5618056)
chr6 (20-92)||(14966499-14966571)
chr6 (20-93)||(3826596-3826669)
chr6 (20-101)||(14969979-14970060)
chr6 (21-76)||(23842580-23842635)
chr6 (21-71)||(20186020-20186070)
chr6 (21-71)||(22149921-22149971)
chr6 (20-100)||(13095489-13095569)
chr6 (21-100)||(24371494-24371574)
chr6 (21-76)||(23848059-23848114)
chr6 (21-71)||(10290262-10290312)
chr6 (21-71)||(17106415-17106465)
chr6 (21-100)||(28111568-28111651)
chr6 (21-100)||(23008336-23008417)
chr6 (21-100)||(23779947-23780028)
chr6 (21-92)||(6514272-6514347)
chr6 (21-77)||(5260086-5260146)
chr6 (21-101)||(28107515-28107599)
chr6 (20-73)||(9839193-9839247)
chr6 (21-76)||(11192373-11192429)
chr6 (21-73)||(22560952-22561004)
[»] chr5 (24 HSPs)
chr5 (20-93)||(19686450-19686523)
chr5 (20-93)||(3195361-3195434)
chr5 (20-93)||(19689833-19689906)
chr5 (20-93)||(30764505-30764578)
chr5 (20-100)||(2453562-2453642)
chr5 (24-93)||(26548364-26548433)
chr5 (24-93)||(26551923-26551992)
chr5 (20-93)||(28562138-28562211)
chr5 (20-93)||(28565706-28565779)
chr5 (20-77)||(30761686-30761743)
chr5 (20-93)||(34652533-34652606)
chr5 (21-71)||(7271304-7271354)
chr5 (21-71)||(33552407-33552457)
chr5 (21-102)||(7625379-7625463)
chr5 (21-71)||(21332471-21332521)
chr5 (21-70)||(4099323-4099372)
chr5 (21-70)||(30066597-30066646)
chr5 (21-73)||(10629489-10629541)
chr5 (21-71)||(21335490-21335540)
chr5 (21-71)||(28787116-28787166)
chr5 (22-71)||(18765527-18765577)
chr5 (35-76)||(33921395-33921435)
chr5 (44-101)||(40799719-40799776)
chr5 (21-72)||(14015936-14015985)
[»] chr3 (38 HSPs)
chr3 (20-105)||(25888233-25888318)
chr3 (20-93)||(2784388-2784461)
chr3 (20-92)||(2279394-2279466)
chr3 (20-100)||(42354169-42354249)
chr3 (20-93)||(18883494-18883567)
chr3 (20-93)||(10960169-10960246)
chr3 (20-93)||(10963676-10963753)
chr3 (20-100)||(54735970-54736050)
chr3 (21-76)||(31549555-31549610)
chr3 (20-74)||(3306132-3306186)
chr3 (20-74)||(30157824-30157878)
chr3 (20-92)||(4250668-4250739)
chr3 (21-71)||(10881851-10881901)
chr3 (21-71)||(10902311-10902361)
chr3 (21-71)||(52200277-52200327)
chr3 (21-70)||(20728419-20728468)
chr3 (20-77)||(10967185-10967246)
chr3 (21-66)||(10885226-10885271)
chr3 (21-70)||(28007853-28007902)
chr3 (26-71)||(43809951-43809996)
chr3 (21-70)||(55031856-55031905)
chr3 (24-71)||(41977375-41977422)
chr3 (30-77)||(44509023-44509070)
chr3 (24-70)||(19304477-19304523)
chr3 (21-70)||(47051857-47051907)
chr3 (21-71)||(52309405-52309455)
chr3 (21-70)||(16244244-16244293)
chr3 (21-70)||(19301051-19301100)
chr3 (21-76)||(22993476-22993532)
chr3 (21-71)||(47055287-47055338)
chr3 (21-55)||(281995-282029)
chr3 (21-93)||(539188-539259)
chr3 (27-76)||(3292732-3292782)
chr3 (21-73)||(16184465-16184515)
chr3 (21-77)||(18542915-18542972)
chr3 (35-100)||(27055172-27055236)
chr3 (21-70)||(54461372-54461421)
chr3 (21-70)||(55034705-55034754)
[»] chr7 (23 HSPs)
chr7 (20-100)||(8398099-8398179)
chr7 (20-93)||(11825132-11825205)
chr7 (20-93)||(22232403-22232476)
chr7 (20-93)||(22254263-22254336)
chr7 (20-92)||(26153433-26153505)
chr7 (20-93)||(5826485-5826558)
chr7 (20-100)||(8258167-8258247)
chr7 (20-77)||(22257527-22257584)
chr7 (20-101)||(5796813-5796895)
chr7 (21-71)||(35961373-35961423)
chr7 (20-72)||(23467066-23467118)
chr7 (21-92)||(23776170-23776242)
chr7 (21-101)||(10345449-10345531)
chr7 (21-71)||(26557772-26557822)
chr7 (21-100)||(48645740-48645821)
chr7 (22-70)||(17731094-17731142)
chr7 (20-100)||(44363597-44363677)
chr7 (21-104)||(11397816-11397902)
chr7 (24-70)||(4695757-4695803)
chr7 (21-70)||(9864535-9864584)
chr7 (21-70)||(4595801-4595850)
chr7 (21-70)||(22611527-22611574)
chr7 (49-93)||(23467022-23467066)
[»] chr2 (23 HSPs)
chr2 (20-100)||(1503191-1503271)
chr2 (20-100)||(1506395-1506475)
chr2 (20-100)||(13518571-13518651)
chr2 (20-77)||(11060067-11060124)
chr2 (20-77)||(15719066-15719123)
chr2 (21-102)||(43723968-43724051)
chr2 (20-77)||(15703762-15703819)
chr2 (21-70)||(26366182-26366231)
chr2 (18-70)||(38460614-38460666)
chr2 (21-71)||(15470726-15470776)
chr2 (21-70)||(25820641-25820690)
chr2 (21-101)||(6827039-6827121)
chr2 (21-100)||(13971667-13971748)
chr2 (21-71)||(25138724-25138774)
chr2 (21-70)||(45457420-45457470)
chr2 (21-70)||(13137156-13137205)
chr2 (21-71)||(36808239-36808290)
chr2 (21-71)||(5666785-5666835)
chr2 (21-70)||(31427338-31427388)
chr2 (21-70)||(45454132-45454182)
chr2 (21-59)||(34682955-34682993)
chr2 (21-73)||(29440753-29440803)
chr2 (35-76)||(38315825-38315865)
[»] chr8 (22 HSPs)
chr8 (20-93)||(14188440-14188513)
chr8 (20-93)||(30645754-30645827)
chr8 (20-92)||(31986556-31986628)
chr8 (20-77)||(5964525-5964582)
chr8 (21-77)||(23644094-23644150)
chr8 (20-92)||(31981629-31981701)
chr8 (21-76)||(5980083-5980138)
chr8 (21-70)||(14422016-14422065)
chr8 (20-77)||(18695767-18695824)
chr8 (21-103)||(14589384-14589467)
chr8 (20-77)||(20262824-20262881)
chr8 (20-77)||(21049454-21049511)
chr8 (21-71)||(5538566-5538616)
chr8 (21-70)||(33883146-33883196)
chr8 (21-71)||(12583294-12583344)
chr8 (21-59)||(41836246-41836284)
chr8 (21-77)||(4868524-4868581)
chr8 (21-76)||(22173725-22173778)
chr8 (21-101)||(23597481-23597561)
chr8 (21-92)||(45155040-45155115)
chr8 (21-91)||(25231356-25231429)
chr8 (35-75)||(39659737-39659776)
[»] scaffold0014 (2 HSPs)
scaffold0014 (20-92)||(228914-228986)
scaffold0014 (20-92)||(223988-224060)
[»] scaffold0214 (3 HSPs)
scaffold0214 (20-74)||(13886-13940)
scaffold0214 (20-74)||(27902-27956)
scaffold0214 (20-93)||(20336-20409)
[»] scaffold0360 (2 HSPs)
scaffold0360 (20-101)||(6554-6635)
scaffold0360 (20-100)||(2722-2802)
[»] scaffold0062 (2 HSPs)
scaffold0062 (20-77)||(67623-67680)
scaffold0062 (20-77)||(52674-52731)
[»] scaffold0737 (1 HSPs)
scaffold0737 (20-93)||(7116-7190)
[»] chr1 (9 HSPs)
chr1 (21-71)||(2405797-2405847)
chr1 (21-67)||(29643021-29643067)
chr1 (21-67)||(42022916-42022962)
chr1 (21-70)||(21018254-21018303)
chr1 (21-60)||(41058099-41058138)
chr1 (21-70)||(21110945-21110994)
chr1 (21-71)||(49852924-49852974)
chr1 (35-76)||(34552462-34552502)
chr1 (32-76)||(16190203-16190246)
[»] scaffold1063 (1 HSPs)
scaffold1063 (21-70)||(2773-2822)
[»] scaffold0080 (1 HSPs)
scaffold0080 (21-70)||(27397-27446)
[»] scaffold0996 (1 HSPs)
scaffold0996 (21-100)||(1683-1766)
[»] scaffold0757 (1 HSPs)
scaffold0757 (21-92)||(5638-5711)
[»] scaffold0045 (1 HSPs)
scaffold0045 (21-70)||(90046-90095)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-76)||(118238-118294)
[»] scaffold0034 (1 HSPs)
scaffold0034 (21-91)||(48182-48253)
[»] scaffold1755 (1 HSPs)
scaffold1755 (21-66)||(419-464)
[»] scaffold0520 (1 HSPs)
scaffold0520 (21-70)||(1336-1385)
[»] scaffold0015 (1 HSPs)
scaffold0015 (21-66)||(198430-198475)
[»] scaffold0007 (1 HSPs)
scaffold0007 (21-70)||(248806-248855)
[»] scaffold2073 (1 HSPs)
scaffold2073 (21-92)||(636-711)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 103 - 474
Target Start/End: Complemental strand, 24738596 - 24738226
Alignment:
Q  103 ttatataaatactagattaatttggccaacaatttcctatggnnnnnnncaaccactagatgatttgtagctaaaaaagcaattttacaaaacaatgaca 202  Q
    |||||||||| ||| ||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24738596 ttatataaatcctaaattaatt-ggccaacaatttcctatggttcttttcaaccactagatgatttgtagctaaaaaaccaattttacaaaacaatgaca 24738498  T
Q  203 tctcaatgttaatagaatggattgttggattgtttatgttccatgcttcaagagcatcctcacattttggaggtccagtagcagcccttcttagatcata 302  Q
    | |||||||| ||||||||||||| ||||||| |||||||   ||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  24738497 tttcaatgttcatagaatggattgctggattggttatgtttgctgcttcaagagcatcctcacattttggaggtccagaaccagccgttcttagatcata 24738398  T
Q  303 gctttcattatgaggatccttaaccaactcatccaatgcactttgcaatgacatagaagtgatgaaaccatagcattcagttccacattgtttaatagct 402  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||||||||||||||||||  ||||    
T  24738397 gcttagattatgaggatccttaaccaactcatccaatgcactttgcaatgacatagaagtgaggattccgtagcattcagttccacattgtttagcagct 24738298  T
Q  403 tgacttggatgttccttcagtactttgccaattataaaatattcaccctgttttgacttacctagtgccacc 474  Q
      ||||||||||||||||| |||||||||| ||||| ||| |||| ||||| | |||||| |||||||||||    
T  24738297 ccacttggatgttccttcattactttgccatttatataatgttcagcctgtgtagacttatctagtgccacc 24738226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 11702425 - 11702341
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatcagttt 104  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||  ||||||||||||||||||||||    
T  11702425 gttgagattaacacagtcttcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaattttatcagttt 11702341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 10386213 - 10386293
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||| |||||||    
T  10386213 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaagtttatca 10386293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 10248096 - 10248168
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  10248096 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaat 10248168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 18860047 - 18860127
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||  |||||||||| |||||||    
T  18860047 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatatttttagtacacttgctaaaagtttatca 18860127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 17670581 - 17670654
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  17670581 gttgagattaacatagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaat 17670654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 33927248 - 33927320
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgatagttttactatgcttgctaaaa 92  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||  ||||||||||    
T  33927248 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgatagttttagtacacttgctaaaa 33927320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 3720636 - 3720686
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3720636 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgata 3720686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 12786398 - 12786448
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12786398 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgata 12786448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 15429692 - 15429618
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagt-tttactatgcttgctaaaat 93  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||||||||||| |||| || ||||||||||||    
T  15429692 ttgagattaaatcagtcctcgtggatacgaacttatttttactacttcgatagtatttaatacgcttgctaaaat 15429618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 15436306 - 15436232
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagt-tttactatgcttgctaaaat 93  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||||||||||| |||| || ||||||||||||    
T  15436306 ttgagattaaatcagtcctcgtggatacgaacttatttttactacttcgatagtatttaatacgcttgctaaaat 15436232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 19820990 - 19821040
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  19820990 ttgagattaacacaatcctcgtggatacgaacttattttattacttcgata 19821040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 37103054 - 37103009
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactactt 66  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  37103054 ttgagattaacacagtcctcgtggatacgaacttattttattactt 37103009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 52006367 - 52006318
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  52006367 ttgagattaacacagtcctcgtggatacaaacttattttattacttcgat 52006318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 19827697 - 19827745
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcga 69  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  19827697 ttgagattaacacaatcctcgtggatacgaacttattttattacttcga 19827745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 3797661 - 3797611
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgat 70  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  3797661 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgat 3797611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 15445201 - 15445127
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagt-tttactatgcttgctaaaat 93  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||||||||||| |||| ||  |||||||||||    
T  15445201 ttgagattaaatcagtcctcgtggatacgaacttatttttactacttcgatagtatttagtacacttgctaaaat 15445127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 15811982 - 15811932
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgat 70  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  15811982 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgat 15811932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 35510267 - 35510317
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||| ||||    
T  35510267 ttgagattaacacagtcctcgtggatacgaatttattttattacttggata 35510317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 56199129 - 56199179
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgat 70  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  56199129 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgat 56199179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 5681702 - 5681751
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  5681702 ttgagattaatacagtcctcgtggatacaaacttattttattacttcgat 5681751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 26060778 - 26060829
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgata 71  Q
    |||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  26060778 ttgagattaacatagtcctcgtggatacgaacttatttttattacttcgata 26060829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 11649295 - 11649257
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttatttt 59  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  11649295 ttgagattaacacagtcctcatggatacgaacttatttt 11649257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 15404928 - 15404878
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgat 70  Q
    ||||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  15404928 ttgagattaacacagtcgtcgtggatacgaacttaattttattacttcgat 15404878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 40795288 - 40795338
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    ||||||||||||||||| |||||||||| |||| |||||| ||||||||||    
T  40795288 ttgagattaacacagtcttcgtggatacaaactaattttattacttcgata 40795338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 37739607 - 37739551
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgatagtttt 76  Q
    ||||||||||||| ||||||||||| |||||||| ||| || |||||||||||||||    
T  37739607 ttgagattaacacggtcctcgtggaaacgaacttaattgtattacttcgatagtttt 37739551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 1388144 - 1388194
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    ||||||||||||||||||| || || |||| ||||||||| ||||||||||    
T  1388144 ttgagattaacacagtccttgttgaaacgatcttattttattacttcgata 1388194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 8871545 - 8871495
Alignment:
Q  27 ttaacacagtcctcgtggatacgaacttat-tttactacttcgatagtttt 76  Q
    ||||||||||||||||||| |||| ||| | ||||||||||||||||||||    
T  8871545 ttaacacagtcctcgtggagacgatcttttctttactacttcgatagtttt 8871495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 18911782 - 18911853
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagt-tttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||| ||||  |  |||||||||||||||||| |||| ||  |||||||||||    
T  18911782 ttgagattaacacagtcctcgtggaaacga--tatttttactacttcgatagtatttagtacacttgctaaaat 18911853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 56195802 - 56195852
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgat 70  Q
    |||||||||||||| |||||||| |||||||||| |||||| |||||||||    
T  56195802 ttgagattaacacaatcctcgtgaatacgaacttaattttattacttcgat 56195852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 34502621 - 34502694
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  34502621 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttagtacacttgctaaaat 34502694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 5618056 - 5617976
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||  |||||||||| |||||||    
T  5618056 gttgagattaacacagtcctcgtggatacaaacttattttattacttcgatagttttagtacacttgctaaaagtttatca 5617976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 14966499 - 14966571
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaa 92  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  ||||||||||    
T  14966499 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaa 14966571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 3826669 - 3826596
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| ||  |||||||||||    
T  3826669 gttgagattaacacagtccttgtggatacgaacttatcttattacttcgatagttttagtacacttgctaaaat 3826596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 14969979 - 14970060
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatcag 101  Q
    ||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||  |||||||||| | ||||||    
T  14969979 gttgagattaacatagtcctcatggatacgaacttattttattacttcgatagttttagtacacttgctaaaagtctatcag 14970060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 23842635 - 23842580
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttt 76  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  23842635 ttgagattaacacagtcctcgtggatacgaacttattttattatttcgatagtttt 23842580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 20186020 - 20186070
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20186020 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgata 20186070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 22149971 - 22149921
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22149971 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgata 22149921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 13095569 - 13095489
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||||| ||   ||||||||| |||||||    
T  13095569 gttgagattaacaaagtcatcgtggatacaaacttattttattacttcgatagttttagtacatttgctaaaagtttatca 13095489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 24371494 - 24371574
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||  |||| ||||||| |||||    
T  24371494 ttgagattaacacagtcctcgtggatacgaacttatttttattacttcgataattttagtacacttgttaaaattctatca 24371574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 23848059 - 23848114
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttt 76  Q
    |||||||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  23848059 ttgagattaacacagtcctcgtggatacgaacttattttattatgtcgatagtttt 23848114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 10290262 - 10290312
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  10290262 ttgagattaacacagtcctcgtggatacaaacttattttattacttcgata 10290312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 17106465 - 17106415
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||||||    
T  17106465 ttgagattaacactgtcttcgtggatacgaacttattttattacttcgata 17106415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 28111651 - 28111568
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt----attttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||||  ||||||||||||||    |||||| |||||||||||||||| ||  |||||||||| |||||||    
T  28111651 ttgagattaacacagtccatgtggatacgaacttataaattttattacttcgatagttttagtacacttgctaaaagtttatca 28111568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 23008336 - 23008417
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagt-tttactatgcttgctaaaattttatca 100  Q
    |||||||||||||||||||| ||||||||| ||||  ||||||||||||||||| |||| ||  |||||||||| |||||||    
T  23008336 ttgagattaacacagtcctcatggatacgatcttagatttactacttcgatagtatttagtacacttgctaaaagtttatca 23008417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 23780028 - 23779947
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagt-tttactatgcttgctaaaattttatca 100  Q
    |||||||||||||||||||| ||||||||| ||||  ||||||||||||||||| |||| ||  |||||||||| |||||||    
T  23780028 ttgagattaacacagtcctcatggatacgatcttagatttactacttcgatagtatttagtacacttgctaaaagtttatca 23779947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 6514272 - 6514347
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt----attttactacttcgatagttttactatgcttgctaaaa 92  Q
    ||||||||||||||||||| || |||||||||||    |||||| |||||||||||||||| ||  ||||||||||    
T  6514272 ttgagattaacacagtccttgtagatacgaacttataaattttattacttcgatagttttagtacacttgctaaaa 6514347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 5260086 - 5260146
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt----attttactacttcgatagtttta 77  Q
    |||||||||||| |||||| ||||||||||||||    |||||| ||||||||||||||||    
T  5260086 ttgagattaacatagtccttgtggatacgaacttataaattttattacttcgatagtttta 5260146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 28107599 - 28107515
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt----attttactacttcgatagttttactatgcttgctaaaattttatcag 101  Q
    |||||||||||||| |||  ||||||||||||||    |||||| |||||||||||||||| ||  |||| ||||| ||||||||    
T  28107599 ttgagattaacacaatccctgtggatacgaacttataaattttattacttcgatagttttagtacacttgttaaaagtttatcag 28107515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 9839247 - 9839193
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagt 73  Q
    ||||||||||||||| ||||||||| |||||| ||| ||||| ||||||||||||    
T  9839247 gttgagattaacacaatcctcgtgggtacgaaattatttttattacttcgatagt 9839193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 11192429 - 11192373
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgatagtttt 76  Q
    ||||||||||||| || |||||||| |||||||| ||| || |||||||||||||||    
T  11192429 ttgagattaacacggtactcgtggaaacgaacttaattgtattacttcgatagtttt 11192373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 22561004 - 22560952
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagt 73  Q
    |||||||||||| |||||| ||||  |||| ||||||||| ||||||||||||    
T  22561004 ttgagattaacagagtccttgtgggaacgatcttattttattacttcgatagt 22560952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 19686450 - 19686523
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  19686450 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttagtacacttgctaaaat 19686523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 3195361 - 3195434
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  3195361 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaat 3195434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 19689833 - 19689906
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  19689833 gttgagattaacacagtgctcgtggatacgaacttattttactacttcgatagttttagtacacttgctaaaat 19689906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 30764505 - 30764578
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  30764505 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaat 30764578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 2453562 - 2453642
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||  |||||||||| |||||||    
T  2453562 gttgagattaacacagtcctcgtggatacaaacttattttattacttcgatagttttagtacacttgctaaaagtttatca 2453642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 26548364 - 26548433
Alignment:
Q  24 agattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  26548364 agattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaat 26548433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 26551923 - 26551992
Alignment:
Q  24 agattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  26551923 agattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaat 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 28562211 - 28562138
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||  |||||||||||    
T  28562211 gttgagattaacacagtcctcgtggatacgaacctattttattacttcgatagttttagtacacttgctaaaat 28562138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 28565779 - 28565706
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||  |||||||||||    
T  28565779 gttgagattaacacagtcctcgtggatacgaacctattttattacttcgatagttttagtacacttgctaaaat 28565706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 30761686 - 30761743
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30761686 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagtttta 30761743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 34652606 - 34652533
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||  |||||||||||    
T  34652606 gttgagattaacacagtcctcgtggatacaaacttattttattacttcgatagttttagtacacttgctaaaat 34652533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 7271304 - 7271354
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7271304 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgata 7271354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 33552407 - 33552457
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33552407 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgata 33552457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 7625379 - 7625463
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaac-ttattttactacttcgat--agttttactatgcttgctaaaattttatcagt 102  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  | ||||| ||  |||||||||| |||||||||    
T  7625379 ttgagattaacacagtcctcgtggatacgaactttattttactacttcgatgcatttttagtacacttgctaaaagtttatcagt 7625463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 21332521 - 21332471
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  21332521 ttgaaattaacacagtcctcgtggatacgaacttattttattacttcgata 21332471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 4099372 - 4099323
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  4099372 ttgatattaacacagtcctcgtggatacgaacttattttattacttcgat 4099323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 30066597 - 30066646
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  30066597 ttgagattaacacagtcctcgtggatacgaacctattttattacttcgat 30066646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 10629489 - 10629541
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagt 73  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  10629489 ttgagattaacacagtcctcatggatacaaacttattttattacttcgatagt 10629541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 21335540 - 21335490
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||||||    
T  21335540 ttgaaattaacacagtcctcgtggatacaaacttattttattacttcgata 21335490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 28787166 - 28787116
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  28787166 ttgagactaacacggtcctcgtggatacgaacttattttattacttcgata 28787116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 18765577 - 18765527
Alignment:
Q  22 tgagattaacacagtcctcgtggatacgaactta-ttttactacttcgata 71  Q
    ||||||||||||||||||||| ||||||||||||  |||| ||||||||||    
T  18765577 tgagattaacacagtcctcgtagatacgaacttagatttattacttcgata 18765527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 33921395 - 33921435
Alignment:
Q  35 gtcctcgtggatacgaacttattttactacttcgatagtttt 76  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  33921395 gtcctcgtggatacgaactt-tattactacttcgatagtttt 33921435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 40799776 - 40799719
Alignment:
Q  44 gatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatcag 101  Q
    ||||||||||||||||| |||||||||| |||||  |  |||||||||| ||||||||    
T  40799776 gatacgaacttattttattacttcgatatttttagcacacttgctaaaagtttatcag 40799719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 14015985 - 14015936
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatag 72  Q
    ||||||||||||||||||||||||| ||||  |  |||||||||||||||||    
T  14015985 ttgagattaacacagtcctcgtggaaacga--tatttttactacttcgatag 14015936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 25888318 - 25888233
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatcagttta 105  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||| ||||    
T  25888318 gttgagattaacacagtcctcgtcgatacgaacttattttattacttcgatagttttagtatacttgctaaaaatttatcaattta 25888233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 2784388 - 2784461
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  2784388 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaat 2784461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 2279466 - 2279394
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaa 92  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||    
T  2279466 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtatacttgataaaa 2279394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 42354249 - 42354169
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||| |||||||    
T  42354249 gttgagattgacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaagtttatca 42354169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 18883494 - 18883567
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||  |||||||||||    
T  18883494 gttgagattaacacagtcctcgtgaatacgaacttattttactactttgatagttttagtacacttgctaaaat 18883567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 10960169 - 10960246
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaactta----ttttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||||||    ||||| |||||||||||||||| || ||||||||||||    
T  10960169 gttgagattaacacagtcctcgtggatacgaacttattatttttattacttcgatagttttagtacgcttgctaaaat 10960246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 10963676 - 10963753
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaactta----ttttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||||||    ||||| |||||||||||||||| || ||||||||||||    
T  10963676 gttgagattaacacagtcctcgtggatacgaacttattatttttattacttcgatagttttagtacgcttgctaaaat 10963753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 54736050 - 54735970
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||| |||||||||||||||||||||||||  ||||||||| ||||| ||  |||||||||| |||||||    
T  54736050 gttgagattaacacaatcctcgtggatacgaacttattttataacttcgataattttaatacacttgctaaaagtttatca 54735970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 31549555 - 31549610
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttt 76  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  31549555 ttgagattaacacagtcatcgtggatacgaacttattttattacttcgatagtttt 31549610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 3306132 - 3306186
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtt 74  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  3306132 gttgagattaacacagtcctcgtggatacgaacttaatttattacttcgatagtt 3306186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 30157878 - 30157824
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtt 74  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  30157878 gttgagattaacacagtcctcgtggatacgaacttaatttattacttcgatagtt 30157824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 4250668 - 4250739
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaa 92  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||| ||  ||||||||||    
T  4250668 gttgagattaacacagtcctcgtgg-tacgaatttattttattacttcgatagttttagtacacttgctaaaa 4250739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 10881851 - 10881901
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  10881851 ttgatattaacacagtcctcgtggatacgaacttattttattacttcgata 10881901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 10902311 - 10902361
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  10902311 ttgagattaacacagtcctcgtggatacgaacttattttattacttagata 10902361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 52200277 - 52200327
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  52200277 ttgaaattaacacagtcctcgtggatacgaacttattttattacttcgata 52200327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 20728468 - 20728419
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  20728468 ttgagattaacacagtcctcatggatacgaacttattttattacttcgat 20728419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 10967185 - 10967246
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaactta----ttttactacttcgatagtttta 77  Q
    ||||||||||||||||||||||||||||||||||||    ||||| ||||||||||||||||    
T  10967185 gttgagattaacacagtcctcgtggatacgaacttattatttttattacttcgatagtttta 10967246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 10885226 - 10885271
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactactt 66  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||    
T  10885226 ttgagattaacacagtcctcgtggatacaaacttattttattactt 10885271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 28007902 - 28007853
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  28007902 ttgagattaacatagtcctcgtggatacgaacttattttatcacttcgat 28007853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 43809951 - 43809996
Alignment:
Q  26 attaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||    
T  43809951 attaacacagtccccgtgaatacgaacttattttactacttcgata 43809996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 55031905 - 55031856
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||||    
T  55031905 ttgaaattaacactgtcctcgtggatacgaacttattttattacttcgat 55031856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 41977375 - 41977422
Alignment:
Q  24 agattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  41977375 agattaacacagtcctcgtagatacaaacttattttattacttcgata 41977422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 44509023 - 44509070
Alignment:
Q  30 acacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  44509023 acacagccctcgtggatacaaacttattttattacttcgatagtttta 44509070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 19304523 - 19304477
Alignment:
Q  24 agattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  19304523 agattaacagagtcctcgtggatacaaacttattttattacttcgat 19304477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 47051857 - 47051907
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgat 70  Q
    |||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  47051857 ttgagattaacatagtcctcgtggatacgaacttaattttattacttcgat 47051907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 52309455 - 52309405
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||| |||||||  |||||||||||||||||||||||||| ||||||||||    
T  52309455 ttgaaattaacattgtcctcgtggatacgaacttattttattacttcgata 52309405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 16244244 - 16244293
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    ||||||||||||| ||||||||| |||| ||||||||||| |||||||||    
T  16244244 ttgagattaacacggtcctcgtgtatacaaacttattttattacttcgat 16244293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 19301100 - 19301051
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||||| | ||| ||||||||||||||||||| |||||||||    
T  19301100 ttgagattaacacaatgctcatggatacgaacttattttattacttcgat 19301051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 22993532 - 22993476
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaac-ttattttactacttcgatagtttt 76  Q
    |||||||||||||  |||||||||| |||||| |||||||| |||||||||||||||    
T  22993532 ttgagattaacacgatcctcgtggaaacgaactttattttattacttcgatagtttt 22993476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 47055287 - 47055338
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaa-cttattttactacttcgata 71  Q
    |||||||||||||| |||||||||||||||| || |||||| ||||||||||    
T  47055287 ttgagattaacacaatcctcgtggatacgaacctaattttattacttcgata 47055338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 282029 - 281995
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactta 55  Q
    |||||||||||||||||||| ||||||||||||||    
T  282029 ttgagattaacacagtcctcttggatacgaactta 281995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 539188 - 539259
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagt-tttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||  ||||  |  |||||||||||||||||| |||| ||| |||||||||||    
T  539188 ttgagattaacacagtcctcgtgggaacga--tatttttactacttcgatagtatttagtatacttgctaaaat 539259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 3292782 - 3292732
Alignment:
Q  27 ttaacacagtcctcgtggatacgaacttat-tttactacttcgatagtttt 76  Q
    |||||||||||||||||||||| | ||| | ||||||||||||||||||||    
T  3292782 ttaacacagtcctcgtggatacaatcttttctttactacttcgatagtttt 3292732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 16184515 - 16184465
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagt 73  Q
    ||||||||||||||||||||||||| ||||  |  ||||||||||||||||||    
T  16184515 ttgagattaacacagtcctcgtggaaacga--tatttttactacttcgatagt 16184465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 18542915 - 18542972
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgatagtttta 77  Q
    ||||||||||||| |||||| |||| |||||||| |||||| || |||||||||||||    
T  18542915 ttgagattaacacggtcctcatggaaacgaacttgattttattaattcgatagtttta 18542972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 27055172 - 27055236
Alignment:
Q  35 gtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||| || | |||||||||||||||||||  ||||||||| |||  |||||||    
T  27055172 gtcctcgtggatacgaaatt-tattactacttcgatagttttggtatgcttgccaaatatttatca 27055236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 54461372 - 54461421
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||| ||| || |||| ||||||||||||||||| |||||||||    
T  54461372 ttgagattaatacattcttcgtagatacgaacttattttattacttcgat 54461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 55034754 - 55034705
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||| ||||||| ||| || |||||||||||||||||||| |||||||||    
T  55034754 ttgaaattaacatagttcttgtggatacgaacttattttattacttcgat 55034705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 8398099 - 8398179
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||| |||||||    
T  8398099 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaagtttatca 8398179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 11825205 - 11825132
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  11825205 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaat 11825132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 22232476 - 22232403
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  22232476 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaat 22232403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 22254263 - 22254336
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  22254263 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaat 22254336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 26153433 - 26153505
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaa 92  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  ||||||||||    
T  26153433 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaa 26153505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 5826558 - 5826485
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||  |||||||||||    
T  5826558 gttgagattaacacagtcctcgtggataagaacttattttattacttcgatagttttagtacacttgctaaaat 5826485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 8258167 - 8258247
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||  |||| ||||| |||||||    
T  8258167 gttgagattaacacagtcctcgtagatacgaacttattttattacttcgatagttttagtacacttgttaaaagtttatca 8258247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 22257527 - 22257584
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  22257527 gttgagattaacacagtcctcgtggatacgatcttattttattacttcgatagtttta 22257584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 5796813 - 5796895
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagttttactatgcttgctaaaattttatcag 101  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||  ||||||||| || ||||||    
T  5796813 gttgagattaacacagtcttcgtggatacgaacttatttttattacttcgatagttttagtacacttgctaaatttctatcag 5796895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 35961373 - 35961423
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35961373 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgata 35961423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 23467118 - 23467066
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatag 72  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  23467118 gttgagattaacacagtcctcgtgtatacgaacttattttattacttcgatag 23467066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 23776170 - 23776242
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagttttactatgcttgctaaaa 92  Q
    |||||||||||||||||||||| || ||||||||| ||||| |||||||||||||||| ||| ||||||||||    
T  23776170 ttgagattaacacagtcctcgtagaaacgaacttatttttattacttcgatagttttagtatacttgctaaaa 23776242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 10345449 - 10345531
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat--agttttactatgcttgctaaaattttatcag 101  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||  | ||||| ||  |||||||||||| ||||||    
T  10345449 ttgagattaacacaatcctcgtggatacgaacttattttattacttcgatacatttttagtacacttgctaaaattctatcag 10345531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 26557772 - 26557822
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  26557772 ttgagattaacacagtcctcgtggatatgaacttattttattacttcgata 26557822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 48645740 - 48645821
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat--agttttactatgcttgctaaaattttatca 100  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||  | ||||| ||  |||||||||| |||||||    
T  48645740 ttgaaattaacacagtcctcgtggatacgaacttattttattacttcgatgcatttttagtacacttgctaaaagtttatca 48645821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 17731094 - 17731142
Alignment:
Q  22 tgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||    
T  17731094 tgagattaacacagtccttgtggatacgaacttattttattacttcgat 17731142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 44363677 - 44363597
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||| |||| ||||||||||||| |||| |||||||||| ||||  ||  |||||||||| |||||||    
T  44363677 gttgagattaacacagttctcgaggatacgaacttactttattacttcgatatttttggtacacttgctaaaagtttatca 44363597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 11397902 - 11397816
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgat--agttttactatgcttgctaaaattttatcagttt 104  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||  | ||||| ||  |||||||||| | |||||||||    
T  11397902 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaagtctatcagttt 11397816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 4695757 - 4695803
Alignment:
Q  24 agattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||    
T  4695757 agattaacacagtcctcgtggatacaaacttattttattacttcgat 4695803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 9864584 - 9864535
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||||||||||| ||||||||||||||||||| | |||||||    
T  9864584 ttgagattaacacagtcctcatggatacgaacttattttattgcttcgat 9864535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 4595850 - 4595801
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    ||||||||||||||||||||||| ||| |||| ||||||| |||||||||    
T  4595850 ttgagattaacacagtcctcgtgaatatgaacatattttattacttcgat 4595801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 22611574 - 22611527
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||| ||||||||||  ||||||||||||||| |||||||||    
T  22611574 ttgagattaacaaagtcctcgtg--tacgaacttattttattacttcgat 22611527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 23467066 - 23467022
Alignment:
Q  49 gaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    |||||||||||| |||||||||||||||| ||  |||||||||||    
T  23467066 gaacttattttattacttcgatagttttagtacacttgctaaaat 23467022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 1503271 - 1503191
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||  ||||||||||||||||||    
T  1503271 gttgagattaacacagtcctcgtggatacgaatttattttattacttcgatagttttagtacacttgctaaaattttatca 1503191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 1506475 - 1506395
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||  ||||||||||||||||||    
T  1506475 gttgagattaacacagtcctcgtggatacgaatttattttattacttcgatagttttagtacacttgctaaaattttatca 1506395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 13518571 - 13518651
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||| |||||||    
T  13518571 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaagtttatca 13518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 11060067 - 11060124
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  11060067 gttgagattaacacagttctcgtggatacgaacttattttattacttcgatagtttta 11060124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 15719123 - 15719066
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  15719123 gttgagattaacacagtcctcgtggatacgaacttattttattacttccatagtttta 15719066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 43723968 - 43724051
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcg--atagttttactatgcttgctaaaattttatcagt 102  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  ||| ||||| ||  |||||||||||| |||||||    
T  43723968 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgatatatttttagtacacttgctaaaattctatcagt 43724051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 15703819 - 15703762
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  15703819 gttgaaattaacatagtcctcgtggatacgaacttattttattacttcgatagtttta 15703762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 26366182 - 26366231
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26366182 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgat 26366231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 38460666 - 38460614
Alignment:
Q  18 atgttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  38460666 atgttgagattaacacagtcctcgtagatacaaacttattttactacttcgat 38460614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 15470726 - 15470776
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  15470726 ttgaaattaacacagtcctcgtggatacgaacttattttattacttcgata 15470776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 25820690 - 25820641
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  25820690 ttgaaattaacacagtcctcgtggatacgaacttattttattacttcgat 25820641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 6827039 - 6827121
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat--agttttactatgcttgctaaaattttatcag 101  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| |||  | ||||| ||  |||||||||| ||||||||    
T  6827039 ttgagattaacacagtcctcgtggatatgaacttattttattactttgatgcaattttagtacacttgctaaaagtttatcag 6827121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 13971748 - 13971667
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat--agttttactatgcttgctaaaattttatca 100  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||||||  | ||||| ||  |||||||||| |||||||    
T  13971748 ttgagattaacaaagtcctcgtggataccaacttattttattacttcgatgcatttttagtacacttgctaaaagtttatca 13971667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 25138774 - 25138724
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||| | ||||||||||||||||||||||| ||||||||||    
T  25138774 ttgagattaacacatttctcgtggatacgaacttattttattacttcgata 25138724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 45457420 - 45457470
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgat 70  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  45457420 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgat 45457470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 13137156 - 13137205
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  13137156 ttgagattaagacagtcctcgtggatacgaacttattttattatttcgat 13137205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 36808290 - 36808239
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgata 71  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  36808290 ttgagattaatacagtcctcgtggatacgaacttaattttattacttcgata 36808239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 5666785 - 5666835
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    ||||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  5666785 ttgagatcaacgcagtcctcgtagatacgaacttattttattacttcgata 5666835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 31427388 - 31427338
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgat 70  Q
    ||||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  31427388 ttgagattaacacagtcttcgtggatacgaacttaattttattacttcgat 31427338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 45454132 - 45454182
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgat 70  Q
    |||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  45454132 ttgagattaacacagtcctcgtggatacaaacttaattttattacttcgat 45454182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 34682955 - 34682993
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttatttt 59  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  34682955 ttgagattaccatagtcctcgtggatacgaacttatttt 34682993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 29440753 - 29440803
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagt 73  Q
    ||||||||||||||||||||||||| ||||  |  ||||||||||||||||||    
T  29440753 ttgagattaacacagtcctcgtggaaacga--tatttttactacttcgatagt 29440803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 38315865 - 38315825
Alignment:
Q  35 gtcctcgtggatacgaacttattttactacttcgatagtttt 76  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  38315865 gtcctcgtggatacgaactt-tattactacttcgatagtttt 38315825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 14188440 - 14188513
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  14188440 gttgagattaacgcagtcctcgtggatacgaacttattttattacttcgatagttttagtacacttgctaaaat 14188513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 30645754 - 30645827
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||  |||||||||||    
T  30645754 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgataattttagtacacttgctaaaat 30645827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 31986556 - 31986628
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaa 92  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||  ||||||||||    
T  31986556 gttgagattaacacagtcctcgtgcatacgaacttattttattacttcgatagttttagtacacttgctaaaa 31986628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 5964525 - 5964582
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  5964525 gttgagattaacacagtcctcatggatacgaacttattttattacttcgatagtttta 5964582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 23644094 - 23644150
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  23644094 ttgagattaacacagtcctcgtggatacgaacttattttattatttcgatagtttta 23644150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 31981629 - 31981701
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaa 92  Q
    ||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||  ||||||||||    
T  31981629 gttgagattaacacagtcctcatagatacgaacttattttattacttcgatagttttagtacacttgctaaaa 31981701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 5980138 - 5980083
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttt 76  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  5980138 ttgagattaacacagtcctcgtggatacgaacttatgttattacttcgatagtttt 5980083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 14422016 - 14422065
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14422016 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgat 14422065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 18695824 - 18695767
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  18695824 gttgaaattaacatagtcctcgtggatacgaacttattttattacttcgatagtttta 18695767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 14589467 - 14589384
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgatagttttactatgcttgctaaaattttatcagtt 103  Q
    ||||||||||||||||||||||| |||||||||| |||||| |||||||||| ||||| ||  |||||||||| | ||||||||    
T  14589467 ttgagattaacacagtcctcgtgaatacgaacttaattttattacttcgataattttagtacacttgctaaaaatctatcagtt 14589384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 20262824 - 20262881
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    |||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||    
T  20262824 gttgagattaacacagtcttcgtggatacgaacttactgtattacttcgatagtttta 20262881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 21049454 - 21049511
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    |||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||    
T  21049454 gttgagattaacacagtcttcgtggatacgaacttactgtattacttcgatagtttta 21049511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 5538616 - 5538566
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  5538616 ttgaaattaacacagtcctcatggatacgaacttattttattacttcgata 5538566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 33883196 - 33883146
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt-attttactacttcgat 70  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  33883196 ttgagattaacacagtcctcgtggatacgaacttaattttattacttcgat 33883146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 12583294 - 12583344
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||| ||||||||||||||| ||||||||||| || |||||||    
T  12583294 ttgagattaacatagtcctcgtggatacaaacttattttattatttcgata 12583344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 41836284 - 41836246
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttatttt 59  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  41836284 ttgagattaacacagtcctcatggatacgaacttatttt 41836246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 4868524 - 4868581
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagtttta 77  Q
    |||| ||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||    
T  4868524 ttgatattaacacattcctcgttgatacgaacttatttttattacttcgatagtttta 4868581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 22173778 - 22173725
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttt 76  Q
    ||||||||||||| ||||||||||| ||||  | ||||||||||||||||||||||    
T  22173778 ttgagattaacactgtcctcgtggaaacga--taattttactacttcgatagtttt 22173725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 23597481 - 23597561
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagt-tttactatgcttgctaaaat-tttatcag 101  Q
    ||||||||||||||||||||||||  ||||  |  |||||||||||||||||| |||| ||| ||||||||||| ||||||||    
T  23597481 ttgagattaacacagtcctcgtgggaacga--tatttttactacttcgatagtatttagtatacttgctaaaatatttatcag 23597561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 45155115 - 45155040
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt----attttactacttcgatagttttactatgcttgctaaaa 92  Q
    ||||||||||||| ||||  ||||||||||||||    |||||| |||||||||||||||| ||  ||||||||||    
T  45155115 ttgagattaacacggtccctgtggatacgaacttataaattttattacttcgatagttttagtacacttgctaaaa 45155040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 25231356 - 25231429
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttat----tttactacttcgatagttttactatgcttgctaaa 91  Q
    ||||||||||||||||| | ||||||||||||||||    |||| |||||||||||||||| ||  |||||||||    
T  25231356 ttgagattaacacagtctt-gtggatacgaacttataaaatttattacttcgatagttttagtacacttgctaaa 25231429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 39659776 - 39659737
Alignment:
Q  35 gtcctcgtggatacgaacttattttactacttcgatagttt 75  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  39659776 gtcctcgtggatacgaactt-tattactacttcgatagttt 39659737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 228914 - 228986
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaa 92  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||  ||||||||||    
T  228914 gttgagattaacacagtcctcgtgcatacgaacttattttattacttcgatagttttagtacacttgctaaaa 228986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 223988 - 224060
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaa 92  Q
    ||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||  ||||||||||    
T  223988 gttgagattaacacagtcctcatagatacgaacttattttattacttcgatagttttagtacacttgctaaaa 224060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 13886 - 13940
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtt 74  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13886 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagtt 13940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 27902 - 27956
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtt 74  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27902 gttgagattaacacagtcctcgtggatacgaacttattttattacttcgatagtt 27956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 20336 - 20409
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaat 93  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||  |||||||||||    
T  20336 gttgagattaacacagtcctcgtggatatgaacttattttattacttcggtagttttagtacacttgctaaaat 20409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 6554 - 6635
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatcag 101  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| ||  |||| ||||| ||||||||    
T  6554 gttgagattaacacagtcctcgtggatacgaatttattttattacttcgatatttttagtacacttggtaaaagtttatcag 6635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 2722 - 2802
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| | ||  |||| ||||| |||||||    
T  2722 gttgagattaacacagtccttgtggatacgaacttattttattacttcgatattttaagtacacttggtaaaagtttatca 2802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 67680 - 67623
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  67680 gttgagattaacacagtcctcgtggatacgaacttattttattacttccatagtttta 67623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 52731 - 52674
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaacttattttactacttcgatagtttta 77  Q
    ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  52731 gttgaaattaacatagtcctcgtggatacgaacttattttattacttcgatagtttta 52674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 7190 - 7116
Alignment:
Q  20 gttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagttttactatgcttgctaaaat 93  Q
    |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||  |||||||||||    
T  7190 gttgagattaacaccgtcctcgtggatacgaacttatttttattacttcgatagttttagtacacttgctaaaat 7116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 2405797 - 2405847
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2405797 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgata 2405847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 29643067 - 29643021
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttc 67  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  29643067 ttgagattaacacagtcctcgtggatacgaacttattttattacttc 29643021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 42022916 - 42022962
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttc 67  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  42022916 ttgagattaacacagtcctcgtggatacgaacttattttattacttc 42022962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 21018303 - 21018254
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  21018303 ttgaggttaacacagtcctcgtggatacgaacttattttattacttcgat 21018254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 41058138 - 41058099
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttatttta 60  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41058138 ttgagattaacacagtcctcgtggatacgaacttatttta 41058099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 21110994 - 21110945
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  21110994 ttgagagtaacacagtcctcgtggatacgaacatattttattacttcgat 21110945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 49852974 - 49852924
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgata 71  Q
    |||||||||||||| ||||| || || ||||||||||||| ||||||||||    
T  49852974 ttgagattaacacaatcctcatgaatgcgaacttattttattacttcgata 49852924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 34552502 - 34552462
Alignment:
Q  35 gtcctcgtggatacgaacttattttactacttcgatagtttt 76  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  34552502 gtcctcgtggatacgaactt-tattactacttcgatagtttt 34552462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 16190246 - 16190203
Alignment:
Q  32 acagtcctcgtggatacgaacttattttactacttcgatagtttt 76  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||    
T  16190246 acagtcctcgtggatacgaattta-tttattacttcgatagtttt 16190203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 2773 - 2822
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2773 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgat 2822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 27397 - 27446
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27397 ttgagattaacacagtcctcgtggatacgaacttattttattacttcgat 27446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 1766 - 1683
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt----attttactacttcgatagttttactatgcttgctaaaattttatca 100  Q
    ||||||||||||||||||| ||||||||||||||    |||||| |||||||||||||||| ||  |||||||||||| |||||    
T  1766 ttgagattaacacagtccttgtggatacgaacttataaattttattacttcgatagttttagtacacttgctaaaattctatca 1683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 5638 - 5711
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat--agttttactatgcttgctaaaa 92  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||  ||||||| ||  ||||||||||    
T  5638 ttgagattaaaacagtcctcgtggatacgaacttattttattacttcgatgcagttttagtacacttgctaaaa 5711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 90046 - 90095
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  90046 ttgagattaacacagtcctcgtggatacaaacttattttattacttcgat 90095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 118294 - 118238
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactta-ttttactacttcgatagtttt 76  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  118294 ttgagattaacacaatcctcgtggatacgaacttatttttattacttcgatagtttt 118238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 48253 - 48182
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttat-tttactacttcgatagttttactatgcttgctaaa 91  Q
    ||||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||| ||  |||||||||    
T  48253 ttgagattaacacagtcatcgtggatacgaacttatatttattacttcaatagttttagtacacttgctaaa 48182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1755 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1755
Description:

Target: scaffold1755; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 419 - 464
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactactt 66  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||    
T  419 ttgagattaacacagtcctcgtggatacaaacttattttattactt 464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 1385 - 1336
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    |||||||||||| |||||||||||| |||||||||||||| |||||||||    
T  1385 ttgagattaacagagtcctcgtggacacgaacttattttattacttcgat 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 198430 - 198475
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactactt 66  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||    
T  198430 ttgaaattaacacagtcctcgtggatacgaacttattttattactt 198475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 248806 - 248855
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaacttattttactacttcgat 70  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||||||||    
T  248806 ttgagatcaacacagtcctcgtggacacgaacttattttattacttcgat 248855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2073 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 711 - 636
Alignment:
Q  21 ttgagattaacacagtcctcgtggatacgaactt----attttactacttcgatagttttactatgcttgctaaaa 92  Q
    ||||||||||||||||||  ||||||||||||||    ||||||  ||||||||||||||| ||  ||||||||||    
T  711 ttgagattaacacagtccctgtggatacgaacttgtaaattttatcacttcgatagttttagtacacttgctaaaa 636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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