View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9258_low_12 (Length: 469)
Name: NF9258_low_12
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_low_12 |
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| [»] scaffold1432 (1 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold1432 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: scaffold1432
Description:
Target: scaffold1432; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 1430 - 1820
Alignment:
| Q |
1 |
agattgagaaaggatagggttcggttatttttattgttagaaattttacttgtaaggccaattgaggatgctgaatttagctaaagccgctataatccaa |
100 |
Q |
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| T |
1430 |
agattgagagaggatagggttcggttatttttattgtttgaaattttacttgtaaggccaa--gaggatgctgaatttagctaaagccgctataatccaa |
1527 |
T |
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| Q |
101 |
ttactcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatc |
200 |
Q |
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| T |
1528 |
ttactcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatc |
1627 |
T |
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| Q |
201 |
ataaattcaccaacaatgcagagatattttataaagagttaaaagacatttaatttgatagggagagtattaaatttgactgagagagtacgtaaccaag |
300 |
Q |
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| T |
1628 |
ataaattcaccaaaaatgcagagatattttataaagagttaaaagacatttaatttgatagggagagtattaaatttgactgagagagtacgtaacagaa |
1727 |
T |
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| Q |
301 |
tgaacaccatatatatgcactttt-gttaagatgtgataccatatgaacacgcaaagtgattgtccaaactccaaactattgcaattcacaag |
392 |
Q |
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| T |
1728 |
tgcacgccatatatatgcacttttagctaagatgtgataccatttgaacacacaaagtgattgtccaaactccaaactattgcatttcacaag |
1820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 21943 - 21733
Alignment:
| Q |
1 |
agattgagaaaggatagggttcggttatttttattgttagaaattttacttgtaaggccaattgaggatgctgaatttagctaaagccgctataatccaa |
100 |
Q |
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|||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
21943 |
agattgagaaagactagggttcagttatttttattgtttgaaattttacttgtaaggccaa--gaggatggtgaatttagctaaagccgctataatccaa |
21846 |
T |
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| Q |
101 |
ttactcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatc |
200 |
Q |
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|||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21845 |
ttactcaaaatact-----agtaaaccaaatcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaaatc |
21751 |
T |
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| Q |
201 |
ataaattcaccaacaatg |
218 |
Q |
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| T |
21750 |
ataaaatcaccaacaatg |
21733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 242 - 446
Target Start/End: Original strand, 25269746 - 25269951
Alignment:
| Q |
242 |
aaagacatttaatttgatagggagagtattaaatttgactgagagagtacgtaaccaagtgaacaccatatatatgcactttt-gttaagatgtgatacc |
340 |
Q |
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|||||||||||||||||||| |||| |||||||| ||||||| |||||||||||| || || || |||||||||||||||||| | |||||||||||||| |
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| T |
25269746 |
aaagacatttaatttgatagagagaatattaaatatgactgaaagagtacgtaacaaaatgcacgccatatatatgcacttttagctaagatgtgatacc |
25269845 |
T |
|
| Q |
341 |
atatgaacacgcaaagtgattgtccaaactccaaactattgcaattcacaagcactcatataacttcagtctaattaatcttcatcttccatttctacta |
440 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25269846 |
atttgaacacacaaagtgattgtccaaactccaaactattgcatttcacaagcactcatataacttcagtctaataaatcttcatcttccatttctacta |
25269945 |
T |
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| Q |
441 |
tgacta |
446 |
Q |
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|||||| |
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| T |
25269946 |
tgacta |
25269951 |
T |
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