View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9258_low_14 (Length: 467)
Name: NF9258_low_14
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 74 - 273
Target Start/End: Original strand, 16317419 - 16317618
Alignment:
| Q |
74 |
gtttacgtacgtatgtatgcaaaagttctataaacaacataga--gaacaaaacttaatatactcagaacaaaagttttcgatctagatggagttagcat |
171 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
16317419 |
gtttacgtaagtatgtatgcaaaagttctataaacaacatagatcgaacaaaacttaata--ctcatatcaaaagttttcgatctaaatggagttagcat |
16317516 |
T |
|
| Q |
172 |
gaaattaatgctccttttggcatcctataatgagataaacaatttaaggatgctaatcaattcaaaaccaattatcattaaatattcattcattaaactc |
271 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16317517 |
gaaattaatgccccttttggcatcctataatgagataaacaatttaaggatgctgatcaattcaaaaccaattatcattaaatattcattcattaaactc |
16317616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 288 - 451
Target Start/End: Original strand, 16317691 - 16317854
Alignment:
| Q |
288 |
acttttttggttatatatattcgaacagtctagtgctacaccatggtgccagattggaaatttttcaagtaactgtcacactcttgttacatttgtggat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16317691 |
acttttttggttatatatattcgaacagtctagtgctacaccatggtgccagattggaaatttttcaagtaactgtcacactcttgttacatttgtggat |
16317790 |
T |
|
| Q |
388 |
ctttctttacatgtaaactttgtagaccctaaattaatattgaatagaaaattccatttattta |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
16317791 |
ctttctttacatgtaaactttgtagaccctaaatcaatattgaatagaaaattccatttgttta |
16317854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 16312365 - 16312524
Alignment:
| Q |
12 |
tttggtgttccagaaatatcaatttgtttgagtgaactaaactcttatattccgaaatgcgtgtttacgtacgtatgtatgcaaaagttctataaacaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16312365 |
tttggtgttccagaaatatcaatttgtttgagggaactaaactcttatatttcgaaatgcgtgtttacgtacgaatgtatgcaaaagttctataaacaac |
16312464 |
T |
|
| Q |
112 |
atagagaacaaaacttaatatactcagaacaaaagttttcgatctagatggagttagcatga |
173 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
16312465 |
atagagaacaaaactta--atactcatgtcaaaagttttcgatctaaatagagttagcatga |
16312524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 270 - 451
Target Start/End: Original strand, 16313879 - 16314053
Alignment:
| Q |
270 |
tctaataattatttatttactttt----ttggttatatatattcgaacagtctagtgctacaccatggtgccagattggaaatttttcaagtaactgtca |
365 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
16313879 |
tctaataattatttatttacttttttttttggttatatatattcgaacagtctagtgctacaacatggtgccagattgg-aagttttcaagtaactgtca |
16313977 |
T |
|
| Q |
366 |
cactcttgttacatttgtggatctttctttacatgtaaactttgtagaccctaaattaatattgaatagaaaattccatttattta |
451 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
16313978 |
cactcttgttacatttttggatc----------cgtaaactttcaagaccctaaattaatagtgaatagaaaattccatttgttta |
16314053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 16312629 - 16312733
Alignment:
| Q |
169 |
catgaaattaatgctccttttggcatcctataatgagataaacaatttaaggatgctaatcaattcaaaaccaattatcattaaatattcattcattaaa |
268 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16312629 |
catgaaactaatgctccttttggcatcctataatgagataaacaatttaaggatgatgatcaattcaaaaccaattatcattaaatattcattcattaaa |
16312728 |
T |
|
| Q |
269 |
ctcta |
273 |
Q |
| |
|
||||| |
|
|
| T |
16312729 |
ctcta |
16312733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University