View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9258_low_17 (Length: 430)
Name: NF9258_low_17
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 31749304 - 31748898
Alignment:
| Q |
1 |
tgtgacgcaaaaaactttctatttttagatcatatctttaagtactaaa-tgtatttttcacactatgtatatgtggcagaagcaacaccaaagagtttg |
99 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31749304 |
tgtgacacaaaaaactttctatttttagatcatatctttaagtactaaaatgtatttttcacactatgtatatgtggcagaagcaacaccaaagagtttg |
31749205 |
T |
|
| Q |
100 |
atgagggtgatggggattccaggactcactttgtaccatcttaaaagtcatttacaggtatcataatctttttcctacactgaatccaaaaactataaga |
199 |
Q |
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| T |
31749204 |
atgagggtgatggggattccaggactcactttgtaccatcttaaaagtcatttacaggtatcataatctttttcctacactgaatccaaaaactataaga |
31749105 |
T |
|
| Q |
200 |
gtttgagcttatttgattttctggttattacagaaatatagacttggcaaaagccaactggtagaaacctgttctgacaacaaacaaggtgagttattgt |
299 |
Q |
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| T |
31749104 |
gtttgagcttatttgattttctggttattacagaaatatagacttggcaaaagccaactggtagaaacctgttctgacaacaaacaaggtgagttattgt |
31749005 |
T |
|
| Q |
300 |
ataacagtgatagaatgattggtagttttctgatttggcataatcttgagttattgattcatggtgcagattacatagaaatccaaaacagtgatggtca |
399 |
Q |
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| T |
31749004 |
ataacagtgatagaatgattggtatttttctgatttggcataatcttgagttattgattcatggtgcagattacatagaaatccaaaacagtgatggtca |
31748905 |
T |
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| Q |
400 |
atgcagt |
406 |
Q |
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| T |
31748904 |
atgcagt |
31748898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 18170299 - 18170210
Alignment:
| Q |
71 |
atgtggcagaagcaacaccaaagagtttgatgagggtgatggggattccaggactcactttgtaccatcttaaaagtcatttacaggtat |
160 |
Q |
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| T |
18170299 |
atgtggcagaagcaacaccaaagagtattatgagggtgatggaaattccaggacttactttgtaccatctcaagagccatttacaggtat |
18170210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 18170137 - 18170085
Alignment:
| Q |
231 |
agaaatatagacttggcaaaagccaactggtagaaacctgttctgacaacaaa |
283 |
Q |
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| T |
18170137 |
agaaatatagacttgggaaaagccaacaactagaaacctgctctgacaacaaa |
18170085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 42776958 - 42777095
Alignment:
| Q |
24 |
tttagatcatatctttaagtactaaatg-tat-ttttcacactatgtatatgtggcagaagcaacaccaaagagtttgatgagggtgatggggattccag |
121 |
Q |
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| T |
42776958 |
tttagatcatatctt-aagtactaattgatatattttcccactatgcataggtggcaaatgcaacattaaagaatctaatgagggtgatggtgactccag |
42777056 |
T |
|
| Q |
122 |
gactcactttgtaccatcttaaaagtcatttacaggtat |
160 |
Q |
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| T |
42777057 |
gactcactatgtaccatctcaataaccatttacaggtat |
42777095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 26400193 - 26400227
Alignment:
| Q |
106 |
gtgatggggattccaggactcactttgtaccatct |
140 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
26400193 |
gtgatggggattccaggacacactttgtaccatct |
26400227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 140
Target Start/End: Original strand, 30271387 - 30271416
Alignment:
| Q |
111 |
ggggattccaggactcactttgtaccatct |
140 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30271387 |
ggggattccaggactcactttgtaccatct |
30271416 |
T |
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