View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9258_low_20 (Length: 390)
Name: NF9258_low_20
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 42 - 225
Target Start/End: Original strand, 42994610 - 42994793
Alignment:
| Q |
42 |
aaataaaccatgaacataataaacaaagagtatgggacctttcaagcaaaccaaagcaagtaagctctcaaactcacgtaaagccattttttgatacaaa |
141 |
Q |
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| T |
42994610 |
aaataaaccataaacataataaacaaagattatgggacctttcaagcaaatcaaagcaagtaagctctcaaactcacgtaaagccattttttgatacaaa |
42994709 |
T |
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| Q |
142 |
cacgtgatgctaagtgagtttagaatgagaatggcaagcctttcgatagcaccgcacctatatttatagttagatgacatactt |
225 |
Q |
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| T |
42994710 |
catgtgatgctaagtgagtttagaatgagaatggcaagcctttcgatagcaccgcacctatatttatagttacatgacatactt |
42994793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 42995305 - 42995364
Alignment:
| Q |
312 |
tccatcatctaactctgaagcatgacaccaaatttcagatatctaattgccaataacagt |
371 |
Q |
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| T |
42995305 |
tccatcctctaactctgaagcatgccaccaaatttcagatatctaattgccaataacagt |
42995364 |
T |
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