View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9258_low_23 (Length: 340)
Name: NF9258_low_23
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 16956018 - 16955709
Alignment:
| Q |
15 |
tggacatcagttatacaaaaaggatagctgcaagtttaaaaaactaagaatctgaatttgttgcatagaatgaataaacttgtgcactagttataaggta |
114 |
Q |
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| T |
16956018 |
tggacgtcagttatacaaaaaggatagctgcaagtttaaaaaactaaaaatctgaatttgttgcatagaatgaataaacttgtgcactagttataaggta |
16955919 |
T |
|
| Q |
115 |
gaaagaataaatggcaaggaatagtaaggatagagacaaagcagctggtctgcacgatacggttataagacactgacacccctacatttgcgggaggggg |
214 |
Q |
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| T |
16955918 |
gaaagaataaatggcaaggaatagtaaggatagagacaaagcaactggtctgcacgatacggttataagacattgacacccctacatttgcgggaggggg |
16955819 |
T |
|
| Q |
215 |
gtttgttacctgagcatcagtggaatcggtatcttcacctttaggtggatccccagaattcatcgatcctttcaacggcaactgcaacgaaattatataa |
314 |
Q |
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| T |
16955818 |
ttttgttacctgagcatcagtggaatcggtatcttcacctttaggtggatccccagaattcatcgatcctttcaacggcaactgcaacgaaattatataa |
16955719 |
T |
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| Q |
315 |
tgcagaatgt |
324 |
Q |
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| T |
16955718 |
tgcagaatgt |
16955709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 35631270 - 35631170
Alignment:
| Q |
27 |
atacaaaaaggatagctgcaagtttaaaaaactaagaatctgaatttgttgcatagaatgaataaacttgtgcactagttataaggtagaaagaataaat |
126 |
Q |
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||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| | | |||| ||||||| || ||||||| |||| |
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| T |
35631270 |
atacaaaaaggatagctgcaagtttaaaaaattataaagctgaatttgttgcatagaatgaataaaatggggcacaagttatacagttgaaagaaaaaat |
35631171 |
T |
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| Q |
127 |
g |
127 |
Q |
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| T |
35631170 |
g |
35631170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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