View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9258_low_26 (Length: 317)
Name: NF9258_low_26
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 34895142 - 34894854
Alignment:
| Q |
14 |
cagagattttgattaaacccatttcaaagtttatatcttttctttctgggcttgttttgttttgtgtgatcagtaaaataacagaaaaaagcattcattt |
113 |
Q |
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| T |
34895142 |
cagagattttgattaaacccatttcaaagtttatatcttttctttctgggcttgttttgttttgtgtgatcagtaaaataacaga-aaaagcattcattt |
34895044 |
T |
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| Q |
114 |
tgttcattctcttgccatttttactgtgaaaaatcagaagaag---nnnnnnnnnnnnnnnnnngtgatttttattcatcatgagttttctaacaggctc |
210 |
Q |
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| T |
34895043 |
tgttcattctcttgccatttttactgtgaaaaatcagaagaagaaaaaaaaaaaagtaaaaaaagtgatttttattcatcatgagttttctaacaggctc |
34894944 |
T |
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| Q |
211 |
tcctaaaggctcatgggaacccattatgactgttaagacaaatactcagagttattggattaattggagggttttgctttgtgctatttg |
300 |
Q |
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| T |
34894943 |
tcctaaaggctcatgggaacccattatgactgttaagacaaatactcagagttattggattaattggagggttttgctttgtgctatttg |
34894854 |
T |
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