View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9258_low_32 (Length: 250)
Name: NF9258_low_32
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43355368 - 43355604
Alignment:
| Q |
1 |
tgtattgttgcatataataaacgtggcacaaggactagactttgaagcagtaagacaggaagcatcgaaaagttggcaagcacttgtaacatgctctact |
100 |
Q |
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| T |
43355368 |
tgtattgttgcatataataaacgtggcacaaggactagactttgaagcagtaagacaggaagcatcgaaaagttggcaagcacttgtaacatgctctact |
43355467 |
T |
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| Q |
101 |
gtaaagagtgattagtgcaaatttgtggtctaatatgagtatcaatatgaattgccttcaaattgtttggttcaattgcatccaaacttaagcacctacc |
200 |
Q |
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| T |
43355468 |
gtaaagagtgattagtgcaaatttgtggtctaatatgagtatcaatatgaattgccttcaaattgtttggttcaattgcatccaaacttaagcacctacc |
43355567 |
T |
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| Q |
201 |
tatttctgaacgacatatgtggatgcaaagggtatct |
237 |
Q |
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| T |
43355568 |
tatttctgaacgacatatgtggatgcaaagggtatct |
43355604 |
T |
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Back To:
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 23374693 - 23374632
Alignment:
| Q |
176 |
ttgcatccaaacttaagcacctacctatttctgaacgacatatgtggatgcaaagggtatct |
237 |
Q |
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| T |
23374693 |
ttgcatccaaacttaattacctacttatttccgaacgacatacgtgtatgtaaagggtatct |
23374632 |
T |
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