View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9258_low_37 (Length: 227)

Name: NF9258_low_37
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9258_low_37
NF9258_low_37
[»] chr5 (11 HSPs)
chr5 (1-227)||(31340636-31340862)
chr5 (66-153)||(20084253-20084340)
chr5 (1-45)||(20695233-20695277)
chr5 (1-46)||(12265070-12265115)
chr5 (1-46)||(16622104-16622149)
chr5 (1-46)||(17028869-17028914)
chr5 (178-212)||(20695700-20695734)
chr5 (1-46)||(7742351-7742396)
chr5 (66-123)||(19763171-19763228)
chr5 (1-46)||(22930568-22930613)
chr5 (66-157)||(15693150-15693242)
[»] chr4 (15 HSPs)
chr4 (66-153)||(39134037-39134124)
chr4 (66-157)||(21077916-21078007)
chr4 (1-42)||(5676795-5676836)
chr4 (1-46)||(26188355-26188400)
chr4 (2-46)||(31859361-31859405)
chr4 (66-157)||(31859140-31859231)
chr4 (74-157)||(33519835-33519918)
chr4 (1-43)||(18898593-18898635)
chr4 (173-227)||(29438323-29438377)
chr4 (1-46)||(10577062-10577107)
chr4 (1-46)||(12806423-12806468)
chr4 (1-46)||(15192831-15192876)
chr4 (1-46)||(19602380-19602425)
chr4 (1-46)||(21047791-21047836)
chr4 (1-46)||(39134254-39134299)
[»] chr8 (10 HSPs)
chr8 (77-157)||(28290614-28290694)
chr8 (66-157)||(6887449-6887542)
chr8 (81-156)||(28075306-28075381)
chr8 (1-46)||(12774329-12774374)
chr8 (1-46)||(23876548-23876593)
chr8 (1-46)||(30850519-30850564)
chr8 (173-227)||(30847021-30847075)
chr8 (5-46)||(6887670-6887711)
chr8 (1-46)||(16051764-16051809)
chr8 (1-45)||(13583079-13583123)
[»] chr6 (8 HSPs)
chr6 (6-46)||(30756248-30756288)
chr6 (1-45)||(13723333-13723377)
chr6 (67-157)||(26499101-26499191)
chr6 (1-46)||(32929936-32929981)
chr6 (1-46)||(9725650-9725695)
chr6 (1-45)||(16174819-16174863)
chr6 (1-45)||(17859947-17859991)
chr6 (1-45)||(26499321-26499365)
[»] chr1 (12 HSPs)
chr1 (66-157)||(14744696-14744786)
chr1 (1-46)||(14744911-14744956)
chr1 (1-46)||(15298337-15298382)
chr1 (67-155)||(19257212-19257300)
chr1 (1-35)||(23223980-23224014)
chr1 (1-46)||(19257429-19257474)
chr1 (6-43)||(34933500-34933537)
chr1 (66-157)||(26654528-26654618)
chr1 (1-46)||(11984686-11984731)
chr1 (172-217)||(19257122-19257167)
chr1 (1-46)||(23506380-23506425)
chr1 (1-46)||(25778340-25778385)
[»] scaffold0650 (1 HSPs)
scaffold0650 (1-46)||(5201-5246)
[»] chr3 (8 HSPs)
chr3 (1-46)||(19218659-19218704)
chr3 (1-46)||(28731092-28731137)
chr3 (1-46)||(26419353-26419398)
chr3 (14-46)||(21806115-21806147)
chr3 (81-157)||(26419563-26419639)
chr3 (1-46)||(11475460-11475505)
chr3 (1-46)||(18066273-18066318)
chr3 (1-46)||(21828665-21828710)
[»] chr7 (9 HSPs)
chr7 (6-42)||(5636815-5636851)
chr7 (1-46)||(5312244-5312289)
chr7 (1-46)||(9405325-9405370)
chr7 (1-46)||(20446816-20446861)
chr7 (1-45)||(11467548-11467592)
chr7 (1-46)||(315729-315774)
chr7 (173-222)||(5637135-5637184)
chr7 (1-46)||(18467112-18467157)
chr7 (173-225)||(20347267-20347318)
[»] chr2 (10 HSPs)
chr2 (1-46)||(1733705-1733750)
chr2 (1-46)||(17884030-17884075)
chr2 (1-46)||(21842661-21842706)
chr2 (8-46)||(21844290-21844328)
chr2 (78-156)||(31274599-31274677)
chr2 (180-213)||(25397315-25397348)
chr2 (1-46)||(25474608-25474653)
chr2 (1-46)||(27917509-27917554)
chr2 (1-45)||(24047939-24047983)
chr2 (6-46)||(35708374-35708414)
[»] scaffold0190 (2 HSPs)
scaffold0190 (173-212)||(7913-7952)
scaffold0190 (1-46)||(11132-11177)
[»] scaffold0280 (1 HSPs)
scaffold0280 (174-224)||(17164-17214)
[»] scaffold0386 (2 HSPs)
scaffold0386 (1-46)||(8196-8241)
scaffold0386 (1-46)||(11226-11271)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31340862 - 31340636
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaacnnnnnnnattaggttccacgatggagcatattaggattgacaaccctaattccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||    
T  31340862 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaactttttttattaggttccacgatggagcatattagaattgacaaccctaattccg 31340763  T
Q  101 tctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaattcggatggggatgctacaactgtaactggttgaattgcggtga 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31340762 tcagaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaattcggattgggatgctacaactgtaactggttgaattgcggtga 31340663  T
Q  201 tattaaaataaaatttccactgattca 227  Q
    |||||||||||||||||||||||||||    
T  31340662 tattaaaataaaatttccactgattca 31340636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 20084253 - 20084340
Alignment:
Q  66 gatggagcatattaggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatc 153  Q
    |||||||||||||||||||||  ||||||| ||  ||||||| | |||||| ||||||| |||||||||||||| |||| ||||||||    
T  20084253 gatggagcatattaggattgatgaccctaagtctatctgaacccaacaatactaaatttcttattttctaaattaaattattttaatc 20084340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20695233 - 20695277
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaa 45  Q
    ||||||||||||||||||||||||||| || ||||||||||||||    
T  20695233 ttttctattgttttgtaatgatgtatgctgccatgtgcaactaaa 20695277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12265115 - 12265070
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||    
T  12265115 ttttctattgttttgtaatgatgtgtattgtcatgagcaactaaac 12265070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16622149 - 16622104
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||    
T  16622149 ttttctattgttttgttatggcgtatgttgtcatgtgcaactaaac 16622104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17028869 - 17028914
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||    
T  17028869 ttttctattgatttgtaatgatgtatgttaccatgtgcaactaaac 17028914  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 20695700 - 20695734
Alignment:
Q  178 tgtaactggttgaattgcggtgatattaaaataaa 212  Q
    |||||||||||||||||||||||| ||||||||||    
T  20695700 tgtaactggttgaattgcggtgattttaaaataaa 20695734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7742396 - 7742351
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||| |||||| |||||||||  ||||||||||||||||||||    
T  7742396 ttttctactgttttctaatgatgtccgttgtcatgtgcaactaaac 7742351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 19763228 - 19763171
Alignment:
Q  66 gatggagcatattaggattgacaaccctaattccgtctgaactcgacaatagtaaatt 123  Q
    |||| |||||| |||||||||||||||||||| | |||||||| || | |||||||||    
T  19763228 gatgaagcatactaggattgacaaccctaatttcatctgaactagatagtagtaaatt 19763171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22930568 - 22930613
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||||||||| | || |||||||| ||||    
T  22930568 ttttctattgttttgtaatgatgtatgctatcgtgtgcaacaaaac 22930613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 15693242 - 15693150
Alignment:
Q  66 gatggagca-tattaggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaat 157  Q
    ||||||||| |||||||||||| || ||||||||  |||| || ||||  |||||||||| ||| ||| |||||| | |||||||||| ||||    
T  15693242 gatggagcaatattaggattgataatcctaattctttctgcacccgactgtagtaaatttcttagtttataaattaatttcttttaattgaat 15693150  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 39134124 - 39134037
Alignment:
Q  66 gatggagcatattaggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatc 153  Q
    ||||||||||| ||||||||||||||||||||  || |||||| ||||||||||||||   ||||||||||||| |||||||| ||||    
T  39134124 gatggagcataataggattgacaaccctaattatgtttgaactagacaatagtaaattgcatattttctaaattaaattctttgaatc 39134037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 21077916 - 21078007
Alignment:
Q  66 gatggagcatattaggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaat 157  Q
    |||||||||||||||||||||||||||||||||||| ||| |  |||| | ||||| |  ||| ||||||| || |||||||||||||||||    
T  21077916 gatggagcatattaggattgacaaccctaattccgtatgagcaagacagttgtaaagtgcttagtttctaatttaaattcttttaatcgaat 21078007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5676795 - 5676836
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaact 42  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  5676795 ttttctattgttttgtaatgatgtatgttgctatgtgcaact 5676836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26188355 - 26188400
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||    
T  26188355 ttttctattgttttgttacgatgtatgttgtcatgtacaactaaac 26188400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 31859405 - 31859361
Alignment:
Q  2 tttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||    
T  31859405 tttctattgttttgtaatgatattggttgtcatgtgcaactaaac 31859361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 31859231 - 31859140
Alignment:
Q  66 gatggagcatattaggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaat 157  Q
    ||||||| |||||||| ||||||||||||||| | ||  |||  || | ||||||||| |||  ||||||||||  ||||||||||||||||    
T  31859231 gatggagaatattaggtttgacaaccctaattgcatccaaacaagatagtagtaaattgtttggtttctaaattagattcttttaatcgaat 31859140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 33519835 - 33519918
Alignment:
Q  74 atattaggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaat 157  Q
    ||||||||| ||||||| |||||||||||  |||  ||||||||||||||  ||| ||||| |||| ||||| |||||| ||||    
T  33519835 atattaggagtgacaactctaattccgtccaaacaagacaatagtaaattgcttagtttctgaattaaattcatttaattgaat 33519918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18898593 - 18898635
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaacta 43  Q
    |||||||||||||||| |||||||||||||||||  |||||||    
T  18898593 ttttctattgttttgttatgatgtatgttgtcataagcaacta 18898635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 29438323 - 29438377
Alignment:
Q  173 acaactgtaactggttgaattgcggtgatattaaaataaaatttccactgattca 227  Q
    |||| ||||| ||||||||||| || ||| ||||||||||| |||||||||||||    
T  29438323 acaattgtaagtggttgaattgaggggatgttaaaataaaacttccactgattca 29438377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10577062 - 10577107
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||| ||||||||||||||||||| ||||| ||||| |||||||||    
T  10577062 ttttatattgttttgtaatgatgtttgttgccatgtccaactaaac 10577107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12806468 - 12806423
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| ||||||| | |||||||| ||||||||||    
T  12806468 ttttctattgttttgttatgatgtttattgtcatgagcaactaaac 12806423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15192831 - 15192876
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| |||||||||||||||| | | ||||||||    
T  15192831 ttttctattgttttgttatgatgtatgttgtcaagagaaactaaac 15192876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19602380 - 19602425
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||||||  |||| |||| ||||||||||    
T  19602380 ttttctattgttttgtaatgatgtcggttgccatgagcaactaaac 19602425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21047791 - 21047836
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||| |||||||||||||||||||  |||| |||||||||||||||    
T  21047791 ttttttattgttttgtaatgatgttggttgccatgtgcaactaaac 21047836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39134299 - 39134254
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||| ||||||||| || |||||||||||| |||||    
T  39134299 ttttctattgttttataatgatgtttgatgtcatgtgcaaataaac 39134254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 28290694 - 28290614
Alignment:
Q  77 ttaggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaat 157  Q
    |||| |||||||| | |||||||||||||||| |||| |||||||||| ||||||||| |||| |||||||||||| ||||    
T  28290694 ttagaattgacaatcataattccgtctgaactagacagtagtaaatttcttattttctcaattaaattcttttaatagaat 28290614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 6887542 - 6887449
Alignment:
Q  66 gatggagcatattaggattgacaaccctaattccgtctgaactcgacaata--gtaaattttttattttctaaatttaattcttttaatcgaat 157  Q
    ||||||| |||||||||||||||||||||||| |||||||||  |||||||   |||||| | || |||||||||| | || ||||||||||||    
T  6887542 gatggagaatattaggattgacaaccctaatttcgtctgaaccagacaataatataaattatatagtttctaaattaattttttttaatcgaat 6887449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 28075306 - 28075381
Alignment:
Q  81 gattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaa 156  Q
    |||||||||||| | |||| || || || ||||||||||||||  ||| |||||||||| ||||||||||||||||    
T  28075306 gattgacaaccccagttccatccgaccttgacaatagtaaattgcttagtttctaaattaaattcttttaatcgaa 28075381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12774374 - 12774329
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||||| | |||| |||||||||||||||    
T  12774374 ttttctattgttttgtaatgatgaaggttgccatgtgcaactaaac 12774329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23876548 - 23876593
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||    
T  23876548 ttttctattgttttgtaatgatgtatgtttccatgcgcaactaaac 23876593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30850564 - 30850519
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||    
T  30850564 ttttctattgttttgtaatgttgttagttgtcatgtgcaactaaac 30850519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 30847075 - 30847021
Alignment:
Q  173 acaactgtaactggttgaattgcggtgatattaaaataaaatttccactgattca 227  Q
    |||| |||||||||||||||||  | ||||||||||||||| ||||| |||||||    
T  30847075 acaattgtaactggttgaattgtagcgatattaaaataaaacttccattgattca 30847021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 6887711 - 6887670
Alignment:
Q  5 ctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||  |||| |||||||||||||||    
T  6887711 ctattgttttgtaatgatgtcggttgccatgtgcaactaaac 6887670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16051809 - 16051764
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| ||||||| ||||| |||||| ||||||||    
T  16051809 ttttctattgttttgttatgatgtttgttgccatgtgaaactaaac 16051764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13583123 - 13583079
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaa 45  Q
    ||||| |||||||||||||||||| |||||||||| | |||||||    
T  13583123 ttttccattgttttgtaatgatgtttgttgtcatgagtaactaaa 13583079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 30756248 - 30756288
Alignment:
Q  6 tattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30756248 tattgttttgtaatgatgtatgttgtcatgtgcaactaaac 30756288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13723377 - 13723333
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaa 45  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||    
T  13723377 ttttctattgttttgttatgatgtttgttgtcatgtgcaactaaa 13723333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 26499191 - 26499101
Alignment:
Q  67 atggagcatattaggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaat 157  Q
    ||||| |||||||||||||||||||||||||| |||  ||| ||| | |||||||||  ||||||| |||||  |||| ||||||| ||||    
T  26499191 atggatcatattaggattgacaaccctaattctgtccaaacccgatagtagtaaattgcttattttgtaaataaaattattttaattgaat 26499101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32929981 - 32929936
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||    
T  32929981 ttttctattgttttgtaacgatgtttgttgtcatgtacaactaaac 32929936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9725695 - 9725650
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| ||||||| |||||||||| |||| |||||    
T  9725695 ttttctattgttttgttatgatgtctgttgtcatgagcaattaaac 9725650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16174863 - 16174819
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaa 45  Q
    ||||||||| |||| ||||||||||||||  ||||||||||||||    
T  16174863 ttttctattattttataatgatgtatgttaccatgtgcaactaaa 16174819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17859991 - 17859947
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaa 45  Q
    ||||||||||||||||||| || | ||||| ||||||||||||||    
T  17859991 ttttctattgttttgtaatcatatttgttgccatgtgcaactaaa 17859947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26499365 - 26499321
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaa 45  Q
    |||| ||||| |||||||| |||| ||||||||||||||||||||    
T  26499365 ttttatattgctttgtaattatgtttgttgtcatgtgcaactaaa 26499321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 14744786 - 14744696
Alignment:
Q  66 gatggagcatattaggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaat 157  Q
    |||||||| || |||||||||||||||||||||||||| | ||||||| || |||||| |||| ||||| || | ||||||||||| |||||    
T  14744786 gatggagcttaataggattgacaaccctaattccgtcttacctcgacattaataaattgtttagtttct-aactgaattcttttaaccgaat 14744696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14744956 - 14744911
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  14744956 ttttctattgttttgtaatgatgtcggttgtcatgtgcaactaaac 14744911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15298382 - 15298337
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  15298382 ttttcttttgttttgtaatgatgtatgttatcatgtgcaactaaac 15298337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 19257300 - 19257212
Alignment:
Q  67 atggagcatattaggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcga 155  Q
    ||||| |||| ||||||||||| |||||||| |||| || | ||||| ||||||||| ||||  ||||||||| |||| ||||||||||    
T  19257300 atggatcataataggattgacagccctaatttcgtccgaccccgacagtagtaaattgtttagcttctaaattaaattattttaatcga 19257212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23223980 - 23224014
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  23223980 ttttctattgttttgtaatgatgtatgttgtcatg 23224014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19257474 - 19257429
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||    
T  19257474 ttttctattgttttgtaatgatgtcggttgtcatgagcaactaaac 19257429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 34933537 - 34933500
Alignment:
Q  6 tattgttttgtaatgatgtatgttgtcatgtgcaacta 43  Q
    |||||||||||||| |||||||||||||||||||||||    
T  34933537 tattgttttgtaattatgtatgttgtcatgtgcaacta 34933500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 26654618 - 26654528
Alignment:
Q  66 gatggagcatattaggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaat 157  Q
    ||||||||||| ||||||||| |||||||||| |||| || |  ||||||||| || |  ||| |||||||| | |||||||||||||||||    
T  26654618 gatggagcataataggattga-aaccctaatttcgtccgaccctgacaatagttaactgcttagtttctaaactaaattcttttaatcgaat 26654528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11984731 - 11984686
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||| ||||||||  ||||||||||||| |||||||||||||||    
T  11984731 ttttcttttgttttgcgatgatgtatgttgccatgtgcaactaaac 11984686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 19257167 - 19257122
Alignment:
Q  172 tacaactgtaactggttgaattgcggtgatattaaaataaaatttc 217  Q
    ||||| ||||||||||||||||||||  ||||||||||||| ||||    
T  19257167 tacaattgtaactggttgaattgcggcaatattaaaataaactttc 19257122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23506380 - 23506425
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||||||  || || ||||||||||||||    
T  23506380 ttttctattgttttgtaatgatgttcgtagttatgtgcaactaaac 23506425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25778340 - 25778385
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||||||||| | |||||| |||||||| |||||    
T  25778340 ttttctattgttttgtaatgatatttgttgttatgtgcaattaaac 25778385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5246 - 5201
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||    
T  5246 ttttctattgttttgttatgatgtatgttgtcatgagcaactaaac 5201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19218704 - 19218659
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  19218704 ttttctattgttttgttatgaagtatgttgtcatgtgcaactaaac 19218659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28731137 - 28731092
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||    
T  28731137 ttttctattgttttgtaatgatgtatgttgtcatgtgtagctaaac 28731092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26419353 - 26419398
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||||||  |||| |||||||||||||||    
T  26419353 ttttctattgttttgtaatgatgttggttgccatgtgcaactaaac 26419398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 21806115 - 21806147
Alignment:
Q  14 tgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||||||||||||||||||||    
T  21806115 tgtaatgatgtatgttgtcatgtgcaactaaac 21806147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 26419563 - 26419639
Alignment:
Q  81 gattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaat 157  Q
    |||||||||||||| |||||||||| |  | || |||||||||  ||| ||||| |||| |||||||||||||||||    
T  26419563 gattgacaaccctacttccgtctgaccctggcagtagtaaattgcttaatttctcaattaaattcttttaatcgaat 26419639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11475460 - 11475505
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||| ||||||||||||||||| ||||||| ||| |||||||||||    
T  11475460 ttttatattgttttgtaatgatatatgttgccatctgcaactaaac 11475505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18066273 - 18066318
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| |||| |||| |||||||| ||||||||||    
T  18066273 ttttctattgttttgttatgacgtatattgtcatgagcaactaaac 18066318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21828710 - 21828665
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||| ||||||||||  |||| |||||||||||||||    
T  21828710 ttttctattgtttggtaatgatgtcagttgccatgtgcaactaaac 21828665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 5636815 - 5636851
Alignment:
Q  6 tattgttttgtaatgatgtatgttgtcatgtgcaact 42  Q
    |||||||||||||||||||||||||||||||||||||    
T  5636815 tattgttttgtaatgatgtatgttgtcatgtgcaact 5636851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5312289 - 5312244
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||    
T  5312289 ttttcaattgttttgtaatgatgtcggttgtcatgtgcaactaaac 5312244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9405370 - 9405325
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||    
T  9405370 ttttctattgttttgttatgatgtatgttgccatgagcaactaaac 9405325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20446816 - 20446861
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||    
T  20446816 ttttctattgttttgttatgatgtatgttgccatgagcaactaaac 20446861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11467592 - 11467548
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaa 45  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||    
T  11467592 ttttatattgttttgtaatgatgtattttgttatgtgcaactaaa 11467548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 315729 - 315774
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||| ||||| ||||||||||||| |||| ||||||||||    
T  315729 ttttctattgctttgttatgatgtatgttgccatgagcaactaaac 315774  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 5637135 - 5637184
Alignment:
Q  173 acaactgtaactggttgaattgcggtgatattaaaataaaatttccactg 222  Q
    |||| ||||||||||||||||| ||  |||||||||||||| ||||||||    
T  5637135 acaattgtaactggttgaattgtggaaatattaaaataaaacttccactg 5637184  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18467112 - 18467157
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||||||||||||||||  |||| |||| |||||    
T  18467112 ttttctattgttttgtaatgatgtatgttaccatgcgcaattaaac 18467157  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 20347267 - 20347318
Alignment:
Q  173 acaactgtaactggttgaattgcggtgatattaaaataaaatttccactgatt 225  Q
    |||| |||||| ||||||||||||| ||||||||||| |||| ||||||||||    
T  20347267 acaattgtaaccggttgaattgcggcgatattaaaat-aaatgtccactgatt 20347318  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1733705 - 1733750
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||| ||||||||| |||||||||||||||||| ||||||||||    
T  1733705 ttttcttttgttttgttatgatgtatgttgtcatgagcaactaaac 1733750  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17884075 - 17884030
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||||||  |||| |||||||||||||||    
T  17884075 ttttctattgttttgtaatgatgttggttgccatgtgcaactaaac 17884030  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21842706 - 21842661
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||    
T  21842706 ttttatattgttttgtaatgatgtatgttgccatgtacaactaaac 21842661  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 21844328 - 21844290
Alignment:
Q  8 ttgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  21844328 ttgttttgtaatgatgtatgttgccatgtacaactaaac 21844290  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 31274599 - 31274677
Alignment:
Q  78 taggattgacaaccctaattccgtctgaactcgacaatagtaaattttttattttctaaatttaattcttttaatcgaa 156  Q
    ||||||||||||||||| || |||  ||||| |||| |||||||||  | | ||| |||||| ||||||||||||||||    
T  31274599 taggattgacaaccctactttcgtgcgaactagacagtagtaaattgctaagtttataaattaaattcttttaatcgaa 31274677  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 25397315 - 25397348
Alignment:
Q  180 taactggttgaattgcggtgatattaaaataaaa 213  Q
    |||||||||||||||||||||||| |||||||||    
T  25397315 taactggttgaattgcggtgatataaaaataaaa 25397348  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25474608 - 25474653
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| ||||||| ||||| |||| ||||||||||    
T  25474608 ttttctattgttttgttatgatgtctgttgccatgagcaactaaac 25474653  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27917554 - 27917509
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||||||||  |||| |||| ||||||||||    
T  27917554 ttttctattgttttgtaatgatgtcggttgccatgagcaactaaac 27917509  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24047939 - 24047983
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaa 45  Q
    |||| ||||| |||||||||||||  |||||||||||||||||||    
T  24047939 ttttttattgctttgtaatgatgtcggttgtcatgtgcaactaaa 24047983  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 35708374 - 35708414
Alignment:
Q  6 tattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||| ||||||||||||| |||| ||||||||||    
T  35708374 tattgttttgttatgatgtatgttgccatgagcaactaaac 35708414  T

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Target: scaffold0190 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 7952 - 7913
Alignment:
Q  173 acaactgtaactggttgaattgcggtgatattaaaataaa 212  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  7952 acaattgtaaccggttgaattgcggtgatattaaaataaa 7913  T

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Target: scaffold0190; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11177 - 11132
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||| || || ||||||| |||||||||||||||    
T  11177 ttttctattgttttgtgataatttatgttgccatgtgcaactaaac 11132  T

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Target: scaffold0280 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 17164 - 17214
Alignment:
Q  174 caactgtaactggttgaattgcggtgatattaaaataaaatttccactgat 224  Q
    |||||||||||  |||||||| || ||||||||||||||| ||||||||||    
T  17164 caactgtaacttattgaattgaggcgatattaaaataaaacttccactgat 17214  T

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Target: scaffold0386 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8241 - 8196
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    ||||||||||||||||||  |||||||||  |||||||||||||||    
T  8241 ttttctattgttttgtaacaatgtatgtttccatgtgcaactaaac 8196  T

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Target: scaffold0386; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11271 - 11226
Alignment:
Q  1 ttttctattgttttgtaatgatgtatgttgtcatgtgcaactaaac 46  Q
    |||||||||||||||||| ||||||||||  |||||||| ||||||    
T  11271 ttttctattgttttgtaacgatgtatgtttccatgtgcacctaaac 11226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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