View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9258_low_4 (Length: 551)
Name: NF9258_low_4
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 536
Target Start/End: Complemental strand, 42926013 - 42925495
Alignment:
| Q |
18 |
atctcctggttcggtttctccaccggtggagtctcctccgatgtctccgatgactcgatctttgggaagatctgtgggttctagctctgtaaatgaaatg |
117 |
Q |
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| T |
42926013 |
atctcctggttcggtttctccaccggtggagtctcctccgatgtctccgatgactcgatctttgggaagatctgtgggttctagctctgtgaatgaaatg |
42925914 |
T |
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| Q |
118 |
gtggcttctctgagaaacttacaacttggcaccatgaagtcattaccttcttcatggaatgttcaaatgggttctcctagattcggatctccgagaggac |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925913 |
gtggcttctctgagaaacttacaacttggtaccatgaagtcattaccttcttcatggaatgttcaaatgggttctcctagattcggatctccgagaggac |
42925814 |
T |
|
| Q |
218 |
ccgtgatccgacccggattctgtagcctaccatcgacacctacacaggtgccgagtcgtggtagggttaatcattttgatctttgggatcagagttgtga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925813 |
ccgtgatccgacccggattctgtagcctaccatcgacacctacacaggtgccgagtcgtggtagggttaatcattttgatctttgggatcagagttgtga |
42925714 |
T |
|
| Q |
318 |
ggaagagcctgtgatggagagggtggaatctggaagagatataagggtgaagatgtttgagaaactgagcaaagagaactcttttaatggatcgggtatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42925713 |
agaagagcctgtgatggagagggtggaatctggaagagatataagggtgaagatgtttgagaaactgagcaaagagaactcttttaatggatcgggcatg |
42925614 |
T |
|
| Q |
418 |
ggttcaggttcaggttcgggtgaagttgttgaggatccggatgttgggtgggtttcggagctggtgagccctttcttgggtgattgaatgttgatgattt |
517 |
Q |
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| T |
42925613 |
ggttcaggttcaggtttgggtgaagttgttgaggatccggatgttgggtgggtttcggagctggtgagccctttcttgggtgattgaatgttgatgattt |
42925514 |
T |
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| Q |
518 |
cattttgggtttgtcgtct |
536 |
Q |
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||||||||||||||||||| |
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| T |
42925513 |
cattttgggtttgtcgtct |
42925495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 34340791 - 34340891
Alignment:
| Q |
292 |
tttgatctttgggatcagagttgtgaggaagagcctgtgatggagagggtggaatctggaagagatataagggtgaagatgtttgagaaactgagcaaag |
391 |
Q |
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|||||| | ||||||||||||||||| || |||||| | |||||||| || || |||||||||||| |||| ||||||||||||||| | ||||||| |
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| T |
34340791 |
tttgatttatgggatcagagttgtgaagaggagcctataatggagagagttgagagtggaagagatattagggctaagatgtttgagaaattaagcaaag |
34340890 |
T |
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| Q |
392 |
a |
392 |
Q |
| |
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| |
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| T |
34340891 |
a |
34340891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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