View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9258_low_6 (Length: 522)
Name: NF9258_low_6
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 39079145 - 39078884
Alignment:
| Q |
1 |
tggagttgtcacatgtccttcaccatttttgtgtacttaaacactacacatttttagtcttatgagtcatgaccttaaaagactagctcctgtttgattt |
100 |
Q |
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| T |
39079145 |
tggagttgtcacatgtccttcaccatttttgtgtacttaaacactacacatttt-agtcttatgagtcatgaccttaaaagactagctcctgtttgattt |
39079047 |
T |
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| Q |
101 |
tacagtg-aaaaataaaattagaattgacactgtcttctatagttatgacccgttttagtaaaaatcatagacgttgggttaatgcaaggtgaaatagat |
199 |
Q |
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| T |
39079046 |
tacagtggaaaaataaaattagaattgacactgtcttctatagttatgacccgttttagtaaaaatcatagacgttgggttaatgcaaggtgaaatagat |
39078947 |
T |
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| Q |
200 |
tttatttccaaatattgattnnnnnnnnnngtttttatgtctgaaatgtagaggtgggaaatc |
262 |
Q |
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| T |
39078946 |
tttatttccaaatattgattaaaaaaaaaagtttttatgtccgaaatgtagaggtgggaaatc |
39078884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 315 - 505
Target Start/End: Complemental strand, 39078576 - 39078373
Alignment:
| Q |
315 |
atgaagctatcaat--caagggtccaaaatgaataagaagtacacattgcattaagtggtgaccaattttgaggactaatgtacacagtgaactatcaa- |
411 |
Q |
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| T |
39078576 |
atgaagctatcaatatcaagggtccaaaatgaataataagtacacattgcattaagtggtgaccaattttgaggactaatgtacacagtgaactatcaat |
39078477 |
T |
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| Q |
412 |
-----------atgaagattgacccctcagaaatggtttaaatttattctatatgacattagtctgctaccttttatcattgctgttggttttgaaaaca |
500 |
Q |
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| T |
39078476 |
catcccattaaatgaagattgacccctcagaaatggtttaaatttattctatatgacattagtctgctacc-tttatcattgctgttggttttgaaaaca |
39078378 |
T |
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| Q |
501 |
tctct |
505 |
Q |
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||||| |
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| T |
39078377 |
tctct |
39078373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 39078669 - 39078620
Alignment:
| Q |
258 |
aaatcagatatgatattttggaaaggtagaggtgagagagggccatgaat |
307 |
Q |
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| T |
39078669 |
aaatcagatatgatattttggaaaggtagaggtaagaaagggccatgaat |
39078620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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