View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9258_low_9 (Length: 509)
Name: NF9258_low_9
Description: NF9258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9258_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 501
Target Start/End: Complemental strand, 48896157 - 48895693
Alignment:
| Q |
20 |
gattgttgggtccattaccatnnnnnnngaagtaagattaattctcttgaagtttagaacattacataatcaaatttcatgtatgataaaattccatcat |
119 |
Q |
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| T |
48896157 |
gattgttgggtccattaccataaaaaaagaagtaagatcaattcttttgaagtttagaacattacataatcaaatttcatgtatgataaaattccatcat |
48896058 |
T |
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| Q |
120 |
caatttcctcgttcaaaaagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacataatctcaaaagattagactctcttgaacaaat |
219 |
Q |
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| T |
48896057 |
caatttcctctttcaaaaagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacataatctc----------------ttgaacaaat |
48895974 |
T |
|
| Q |
220 |
taattttagttgcactaaattatgccctgaatcccgttcaaaagagaactatcttgtgagtattatcttgagaaatatctcgttgagaactcaaattcct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48895973 |
taattttagttgcactaaattatgccctgaatcccgttcaaaagagaactatcttgtgagtattatcttgagaaatatctcgttgagaactcaaattcct |
48895874 |
T |
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| Q |
320 |
caccaactcatgcattttgaaaacattccatcatttctattctctctttctttcctacaactcctaatagctacgatcattctcataatacccattctgc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48895873 |
caccaactcatgcattttgaaaacattccatcatttctattctctctttctttcctacaactcctaatagctacgatcattctcataatacccattctgc |
48895774 |
T |
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| Q |
420 |
taacaggggcaaacacttgagtataattttactccatgctcctatttctgcatgctcatgacttgcaacttttatctctgct |
501 |
Q |
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| T |
48895773 |
taacaggggcaaacacttgagtataa-tttactccatgctcctatttctgcatgctcatgacttgcaacttttatctctgct |
48895693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 16216453 - 16216327
Alignment:
| Q |
88 |
atcaaatttcatgtatgataaaattccatcatcaatttcctcgttcaaaaagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacat |
187 |
Q |
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|||||||||| |||||| |||||||||| |||| |||| || | ||||| |||||||||||||||||| |||||||| |||| ||||||||||| | | |
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| T |
16216453 |
atcaaatttcttgtatggaaaaattccattatcagtttcttcaatgaaaaatctcaagagtcttgttttggctgataattttttcaatggaagtgttcct |
16216354 |
T |
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| Q |
188 |
aatctcaaaagattagactctcttgaa |
214 |
Q |
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| T |
16216353 |
aatctcaaaagattaacctctcttgaa |
16216327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 16963708 - 16963573
Alignment:
| Q |
88 |
atcaaatttcatgtatgataaaattccatcatcaatttcctcgttcaaaaagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacat |
187 |
Q |
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|||||||||| |||||| ||||||||||||||| |||| || | |||| || ||||||||||||||| |||||||| |||| ||||||||||| | | |
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| T |
16963708 |
atcaaatttcttgtatggaaaaattccatcatcagtttcttcaatgaaaagtcttaagagtcttgttttggctgataattttttcaatggaagtgttcct |
16963609 |
T |
|
| Q |
188 |
aatctcaaaagattagactctcttgaacaaattaat |
223 |
Q |
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||||||||||||||| |||||||||| | |||||| |
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| T |
16963608 |
aatctcaaaagattaacctctcttgaagagattaat |
16963573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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