View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9259_high_6 (Length: 370)
Name: NF9259_high_6
Description: NF9259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9259_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 36753919 - 36753562
Alignment:
| Q |
1 |
tgctttaaaactttgaaagagaatatgttgtcttttgtggtcttttgacaaacttaagttttgggacgacagaaagacatgtgatttcgagacatatgaa |
100 |
Q |
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| T |
36753919 |
tgctttaaaactttgaaagagaatatgttgtctcttgtggtcttttgacaaacttaagttttgggacgatagaaagacatgtgatttcgagacatatgat |
36753820 |
T |
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| Q |
101 |
tggtagtctttcgtgaaagtcagggatgtgtcacttttcttcttgttggcactggtagtggtagtagtaaataattccctcattttcacgtagctatgct |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36753819 |
tggcagtctttcgtgaaagtcagggatgtgtcacttttcttcttgttggcactggtagtagtagtagtaaataattccctcattttcacgtagctatgct |
36753720 |
T |
|
| Q |
201 |
ttaacacaaccaaggacaaacattgatgtgtatagtgattcattaattggagttggcagacttagatatttatatattgatacgaaaatcggcatgaaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |
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| T |
36753719 |
ttaacacaaccaaggacaaacattgatgtgtatagtgattcattaattggagttggcagacttagatatttatatatcgatacgaaaatcggcatcagaa |
36753620 |
T |
|
| Q |
301 |
agaatcggatacgaaactctgaggagtagaacacttcaacatctcaaacgaacaccaa |
358 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36753619 |
agaatcggatatgaaactctgaggagtagaacacttcaagatctcaaacgaacaccaa |
36753562 |
T |
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