View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9259_low_11 (Length: 377)
Name: NF9259_low_11
Description: NF9259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9259_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 33 - 361
Target Start/End: Complemental strand, 11003508 - 11003186
Alignment:
| Q |
33 |
ctttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaaga |
132 |
Q |
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| T |
11003508 |
ctttgaggaagtcgtttggagaaaattacctgaaggtgcac------gacgttggttattgtaatcgaggatgtctgaataccaaccatgtttacaaaga |
11003415 |
T |
|
| Q |
133 |
ctattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttgccaccatgcttaaaatcccaagatgtaa |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11003414 |
ctattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaatgttgttgtttccaccatgcttaaaatcccaagatgtaa |
11003315 |
T |
|
| Q |
233 |
gaaacatcaactctatacgacactcatctcccagagccaattccaaaagagatttgtccccaaacacaatatagttccctttctgctgctcataagaatt |
332 |
Q |
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| T |
11003314 |
gaaacatcaactctatacgacactcatctcccagagccaattccaaaagagatttgtccccaaacacaatatagttccctttctgctgttcataagaatt |
11003215 |
T |
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| Q |
333 |
actaatgttcatacaagcagcatcaaagt |
361 |
Q |
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| T |
11003214 |
actaatgttcatacaagcagcatcaaagt |
11003186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 35 - 361
Target Start/End: Complemental strand, 11000532 - 11000209
Alignment:
| Q |
35 |
ttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaagact |
134 |
Q |
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| T |
11000532 |
ttgaggaagtcgtttggagaaaattacctaaacgtgcacaaccacgacgttggttattgtaatcgaggatttctgaataccaaccatgtttacaaaggct |
11000433 |
T |
|
| Q |
135 |
attgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttgccaccatgcttaaaatcccaagatgtaaga |
234 |
Q |
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| T |
11000432 |
attgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaaaaaatgtt---gttgccaccatgttcaaaaggccaagatgtaaga |
11000336 |
T |
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| Q |
235 |
aacatcaactctatacgacactcatctcccagagccaattccaaaagagatttgtccccaaacacaatatagttccctttctgctgctcataagaattac |
334 |
Q |
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|||||||||||||||||||| ||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11000335 |
aacatcaactctatacgacatccatctcctagaccaaattccaaaagagatctgtccccaaacacaatatagttccctttctgctgctcataagaattac |
11000236 |
T |
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| Q |
335 |
taatgttcatacaagcagcatcaaagt |
361 |
Q |
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| T |
11000235 |
taatgttcatacaagcagcatcaaagt |
11000209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 11009082 - 11009172
Alignment:
| Q |
111 |
ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttg |
201 |
Q |
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||||| |||||||||||| |||| |||||||| |||||||||||||||||| ||||| |||||||||| || |||||||||||||||||| |
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| T |
11009082 |
ataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttg |
11009172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 11034495 - 11034576
Alignment:
| Q |
123 |
tttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg |
204 |
Q |
| |
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|||||||| ||| |||||||| |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |
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| T |
11034495 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgttgttgttg |
11034576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 10921610 - 10921708
Alignment:
| Q |
105 |
gtctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgtt |
203 |
Q |
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||||| |||||| |||| |||||||| ||| |||||||| |||||||||||||||||||| ||| |||||| || || || || |||||||||||||| |
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| T |
10921610 |
gtctgcataccatccatctttacaaaaactgttgagccaagaaagttcaaatccataaaagatctcacgacggatgtctgtgcatgaaatgttgttgtt |
10921708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 10975113 - 10975204
Alignment:
| Q |
106 |
tctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgtt |
197 |
Q |
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|||| ||||| |||||| || |||| |||||||||||| |||| ||||||||||||| ||||||||||||| | ||| | ||||||||||| |
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| T |
10975113 |
tctgcataccgaccatgattgcaaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgtt |
10975204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 10905207 - 10905293
Alignment:
| Q |
111 |
ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgtt |
197 |
Q |
| |
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|||||||||||| || ||| |||||||||||| |||| ||||||||||||| ||||||||||||| | ||| | ||||||||||| |
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| T |
10905207 |
ataccaaccatgattgtaaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgtt |
10905293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 10987980 - 10988070
Alignment:
| Q |
114 |
ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg |
204 |
Q |
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|||| ||| ||||||||||||||||||||| || | ||||||||||||| |||||||||| || ||||| ||||||||||| |||||| |
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| T |
10987980 |
ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttg |
10988070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 11019148 - 11019238
Alignment:
| Q |
114 |
ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg |
204 |
Q |
| |
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|||| ||| ||||||||||||||||||||| || | ||||||||||||| |||||||||| || ||||| ||||||||||| |||||| |
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| T |
11019148 |
ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttg |
11019238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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