View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9259_low_16 (Length: 294)
Name: NF9259_low_16
Description: NF9259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9259_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 6684549 - 6684814
Alignment:
| Q |
18 |
tcatttaaatatttcttatctacttaatgtggaactcgcaagggttgtcttatctctcacaagtaataataaataa----ataaaatgaaaactcctaat |
113 |
Q |
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| T |
6684549 |
tcatttaaatatttattatctacttaatgtggaactcacaagggttgtctaatctctcacaagtaataataaataagtatataaaatgaaaactcctaat |
6684648 |
T |
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| Q |
114 |
atgtgatgttagagataaggatagtaggatacttctgcgatggggattggctgatttagtttatgttgtagaaactgcaaagacaaacgtaaagaaatgt |
213 |
Q |
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| T |
6684649 |
atgtgatgttagagataaggatagtaggatacttctgcgatggggattggctgatttagtttatgttgtggaaactgcaaagacaaacgtaaagaaatgt |
6684748 |
T |
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| Q |
214 |
ccttttctttttccctttttattgtttatttggtttatatattctatcaaaaagaccacgagtatt |
279 |
Q |
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| T |
6684749 |
cctttcctttttccctttttattgtttatttggtttatatattctatcaaaaagaccacgagtatt |
6684814 |
T |
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