View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9259_low_18 (Length: 268)
Name: NF9259_low_18
Description: NF9259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9259_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 1748827 - 1748591
Alignment:
| Q |
14 |
agaggcttatgtgatcatgtcaaatccattggatggagattctaaagctcttctctcatttgttagtggcttcaacaaagtagtccttgatgtgcattac |
113 |
Q |
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| T |
1748827 |
agaggcttatgtgatcatgtcaaatccattggatggagattctaaagctcttctctcatttgttagtggcttcaacaaagtagtccttgatgtgcattac |
1748728 |
T |
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| Q |
114 |
tacaatatgttttgggaaaaattcaatggcatgaatgttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaa |
213 |
Q |
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| T |
1748727 |
tacaatatgttttgggaaaaattcaatggcatgaatgttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaa |
1748628 |
T |
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| Q |
214 |
caaatgctcttacttttataggtaaaaaccaaatcct |
250 |
Q |
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| T |
1748627 |
caaatgctcttacttttataggtaaaaaccaaatcct |
1748591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 1717470 - 1717237
Alignment:
| Q |
19 |
cttatgtgatcatgtcaaatccattggatggagattctaaagctcttctctcatttgttagtggcttcaacaaagtagtccttgatgtgcattactacaa |
118 |
Q |
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| T |
1717470 |
cttatgtgatcatgtcaaatccattggccacagattctaaacttcttctctcatttgtcaaaggctttgataaagtagtccttgatgtgcattactacaa |
1717371 |
T |
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| Q |
119 |
tatgttttgggaaaaattcaatggcatgaatgttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaat |
218 |
Q |
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| T |
1717370 |
tttgtattcggacaaattcaatggcatgaatgttcaacaaaatattgactacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaat |
1717271 |
T |
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| Q |
219 |
gctcttacttttataggtaaaaaccaaatccttg |
252 |
Q |
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| T |
1717270 |
gctcttagttttgtaggtaaataccaaatccttg |
1717237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 1738967 - 1738732
Alignment:
| Q |
19 |
cttatgtgatcatgtcaaatccattggatggagattctaaagctcttctctcatttgttagtggcttcaacaaagtagtccttgatgtgcattactacaa |
118 |
Q |
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| T |
1738967 |
cttatgtgatcatgtcaaacccattggccacagattccaaacttcttctctcatttgtcaaaggctttgataaagtagtccttgatgtgcattactacaa |
1738868 |
T |
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| Q |
119 |
tatgttttgggaaaaattcaatggcatgaatgttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaat |
218 |
Q |
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| T |
1738867 |
tatgttttgggacaaattcaatggcatgaatgttcaacaaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaat |
1738768 |
T |
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| Q |
219 |
gctcttacttttataggtaaa--aaccaaatccttg |
252 |
Q |
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| T |
1738767 |
gctcttagttttgtaggtaaaataaccaaatccttg |
1738732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 1754139 - 1753919
Alignment:
| Q |
18 |
gcttatgtgatcatgtcaaatccattggatggagattctaaagctcttctctcatttgttagtggcttcaacaaagtagtccttgatgtgcattactaca |
117 |
Q |
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||||||||||| |||||||| |||||||||| ||||||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||||||||||| |
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| T |
1754139 |
gcttatgtgataatgtcaaacccattggatgcagattctaaagtacttctctcatttgtcactggattcaacaaagttgtccttgatgtgcattactaca |
1754040 |
T |
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| Q |
118 |
atatgttttgggaaaaattcaatggcatgaatgttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaa |
217 |
Q |
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| T |
1754039 |
atctttattcggacaaattcactaacatgaatgttcaacaaaatattgactacataaacaacgaaagagcctcagatcttagcggcgtctcttcaacaaa |
1753940 |
T |
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| Q |
218 |
tgctcttacttttataggtaa |
238 |
Q |
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| T |
1753939 |
cgctcttagttttgtaggtaa |
1753919 |
T |
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