View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9259_low_2 (Length: 766)
Name: NF9259_low_2
Description: NF9259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9259_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 710; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 18 - 755
Target Start/End: Original strand, 17235676 - 17236413
Alignment:
| Q |
18 |
ctaacaaatgtaagtgagatccatttaagaggttgaaccctcgaataaatggttaccggacaagacacaaatttaccactacatttcctcaacaaattta |
117 |
Q |
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| T |
17235676 |
ctaacaaatgcaagtgagatccatttaagaggttgaaccctcgaataattggttaccggacaagacacaaatttaccactacatttcctcaacaaattta |
17235775 |
T |
|
| Q |
118 |
atcaaccttacgacgcacctaatttctcatataacacactaaaacctttgaaattctccactgaaaccaactatcccctatattctttatttcttcactt |
217 |
Q |
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| T |
17235776 |
atcaaccttacgacgcacctaatttctcatataacacactaaaacctttgaaattctccactgaaaccaactatcccctatattctttatttcttcactt |
17235875 |
T |
|
| Q |
218 |
aatcttccaaacaatacggataaactcaattcaacattataacagaactacgaataccttctatatcaaatcgagattgaatccataacttcatttcaaa |
317 |
Q |
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| T |
17235876 |
aatcttccatacaatacgaataaactcaattcaacattataacagaactacgaataccttctatatcaaatcgagattgaatccataacttcatttcaaa |
17235975 |
T |
|
| Q |
318 |
aacaaaacctatcaacattctttcacattcgaaaacacaattcagaaactcaatgaaatcaatcacagaaacaaactatataaatcataacaacaaaaca |
417 |
Q |
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| T |
17235976 |
aacaaaacctatcaacattctttcacattcgaaaacacaattcagaaactcaatgaaatcaatcacagaaacaaactatataaatcataacaacaaaaca |
17236075 |
T |
|
| Q |
418 |
aatcgttatatgtaaaaacgcgattcaaaacaacaaatttaacagaatagaatcagaatcaacgcaatttcgatttgttcaccttttccaaagatcacgc |
517 |
Q |
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| T |
17236076 |
aatcgttatatgtaaaaacgcgattcaaaacaacaaatttaacagaatagaatcagaatcaacgcaatttcgatttgttcaccttttccaaagatcacgc |
17236175 |
T |
|
| Q |
518 |
tgaggtttggctgcaagggaacgccaaagacgatccatctcaacgcagagggattggatctggttgatatctctcttcacggagaaggaaagctctgaat |
617 |
Q |
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| T |
17236176 |
tgaggtttggctgcaagggaacgccaaagacggtccatctcaacgcagagggattggatctggttgatatctctcttcacggagaaggaaagctctgaat |
17236275 |
T |
|
| Q |
618 |
cgacaccgacgacagcggcggaggtggaggtggaatgttcgaggcgctcgagacgttcaaggccatcgcgacaacgaagtagcagcttcttcgcgctttg |
717 |
Q |
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| T |
17236276 |
cgacaccgacggcagcggcggaggtggaggtggaatgttcgaggcgctcgagacgttcgaggccatcgcgacaacgaagtagcagcttcttcgcgctttg |
17236375 |
T |
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| Q |
718 |
gtgtacttctgagagcgttcctccgcctcctcctactt |
755 |
Q |
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| T |
17236376 |
gtgtacttctgagagcgttcctccgcctcctcctactt |
17236413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 8e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 469 - 745
Target Start/End: Complemental strand, 46468268 - 46468002
Alignment:
| Q |
469 |
atcagaatcaacgcaatttcgatttgttcaccttttccaaagatcacgctgaggtttggctgcaagggaacgccaaagacgatccatctcaacgcagagg |
568 |
Q |
| |
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|||||||||||| ||||||| || ||||||||||||||||||||||| |||||||||| ||| | |||||||||||| ||||||||||||| |||||| |
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| T |
46468268 |
atcagaatcaac-caatttcaatatgttcaccttttccaaagatcacattgaggtttggatgcgacggaacgccaaaggcgatccatctcaaatcagagg |
46468170 |
T |
|
| Q |
569 |
gattggatctggttgatatctctcttcacggagaaggaaagctctgaatcgacaccgacgacagcggcggaggtggaggtggaatgttcgaggcgctcga |
668 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||| ||||| | | |||||| ||||||||||| |||||||||||||| || |
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| T |
46468169 |
gattggatctggttgatatccctcttcacggcgaaggaaagctccgaatcaatgctgacgacggcggcggaggtagaggtggaatgttc-ag-------- |
46468079 |
T |
|
| Q |
669 |
gacgttcaaggccatcgcgacaacgaagtagcagcttcttcgcgctttggtgtacttctgagagcgttcctccgcct |
745 |
Q |
| |
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|||||| ||||| ||||| || || |||| |||||||| |||||||||||| ||| |||||| |||||||||||| |
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| T |
46468078 |
gacgtttgaggccgtcgcggcagcggagtaatagcttctttgcgctttggtgttcttttgagagtgttcctccgcct |
46468002 |
T |
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