View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9259_low_21 (Length: 239)
Name: NF9259_low_21
Description: NF9259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9259_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38835200 - 38835423
Alignment:
| Q |
1 |
tgtatccttgttagcagcactgtccagtatagaaccgctacttttcttgttaaatggag-ctccctcatcttcctcactttcttctctggtgaagtagct |
99 |
Q |
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| T |
38835200 |
tgtatccttgttagcagccctgtccagtatagaaccgctacttttcttgttaaatggagactccctcatcttcctcactttcttctctggtgaagtagct |
38835299 |
T |
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| Q |
100 |
gtactttcagctgactgcaacatatcagtaaataatttttgacccaatgtttgtctggtgcctacatttcttttcttgggggcggtagatgccgtcttgg |
199 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38835300 |
gtactttcagctgactaaaacatatcagtaaataatttttgacccaatgtttgtctggtgcctacatttcttttcttgggggcggtagatgccgtcttgg |
38835399 |
T |
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| Q |
200 |
cattttgagcagcaggctttctcc |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
38835400 |
cattttgagcagcaggctttctcc |
38835423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 44 - 179
Target Start/End: Original strand, 9869687 - 9869823
Alignment:
| Q |
44 |
ttcttgttaaatggag-ctccctcatcttcctcactttcttctctggtgaagtagctgtactttcagctgactgcaacatatcagtaaataatttttgac |
142 |
Q |
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|||||||||||||| | ||||||||| || |||||||||||||||||||| ||| || |||||||||||| ||||||||||||||| || |||||||||| |
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| T |
9869687 |
ttcttgttaaatggtgactccctcatttttctcactttcttctctggtgatgtacctatactttcagctggctgcaacatatcagttaacaatttttgac |
9869786 |
T |
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| Q |
143 |
ccaatgtttgtctggtgcctacatttcttttcttggg |
179 |
Q |
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| T |
9869787 |
ccaatgttgatttgctgcctacatttcttttcttggg |
9869823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 9869937 - 9869966
Alignment:
| Q |
194 |
tcttggcattttgagcagcaggctttctcc |
223 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
9869937 |
tcttggcattttgagcagcaggctttctcc |
9869966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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