View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9259_low_3 (Length: 686)
Name: NF9259_low_3
Description: NF9259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9259_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 36479472 - 36479905
Alignment:
| Q |
1 |
atcaagtatagataggttgaaactgagtaatcgagcaaactttcgtatggtagctcatatgaaaaattaagcgtttaaaacaaatgtaacaatnnnnnnn |
100 |
Q |
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| T |
36479472 |
atcaagtatagataggttgaaactgagtaatcgagcaaactttcgtatggtagctcatatgaaaaattaagcgtttaaaacaaatgtagcaataaaaaaa |
36479571 |
T |
|
| Q |
101 |
nn--ttgatttgaagtcatcaaagagannnnnnnngacacatggtcatcaaagagatagatctatcgagcaatgatatatagtgtcacatgaacatgnnn |
198 |
Q |
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|||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36479572 |
aaaattgacttgaagtcatcaaagagattttttttgacacatagtcatcaaagagatagatctatcgagcaatgatatatagtgtcacatgaacatgttt |
36479671 |
T |
|
| Q |
199 |
nnnncacttcacattctaacttgcatatatttattttgattccttacaaaattgtttatatctccgatatgcaatgtgtagatcccttggacggttgcag |
298 |
Q |
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| T |
36479672 |
tttaaacttcacattctaacttgcatatatttattttgattccttacaaaatggtttatatctccgatatgcaatgtgtagatcccttggacggttgcag |
36479771 |
T |
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| Q |
299 |
gagcagaacaatgtttcaagtctatttataataacaaaacaacccaaacaaaaattataagnnnnnnnnnntgatatattcataggggtcttaagcgtat |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||| |
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| T |
36479772 |
gagcagaacaatgtttcaagtctatttataataacaaaacaacccaaacaaaaattataag--aaaaaaaattatatattcataggggtcgtaggcgtat |
36479869 |
T |
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| Q |
399 |
ttgaatctaggtttgcatatgatacattaagcttaaa |
435 |
Q |
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| T |
36479870 |
ttgaatctaggtttgcatat-atacattaggcttaaa |
36479905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 571 - 668
Target Start/End: Original strand, 36480033 - 36480130
Alignment:
| Q |
571 |
tagagaaagttgaaaactataaatccacgtggcttccggtttgtcaattgtattgtagcaatctaatctcctctaaaggagtgcgtcaaatccttttt |
668 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36480033 |
tagagaaagttgaaaactataaatccacgtggcttccggtttgtcaattgtattgtagcaatctaatctcctctaaaggagtgcgtcaaatccttttt |
36480130 |
T |
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