View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9260_high_3 (Length: 493)

Name: NF9260_high_3
Description: NF9260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9260_high_3
NF9260_high_3
[»] chr4 (4 HSPs)
chr4 (3-360)||(2598510-2598856)
chr4 (128-262)||(12699758-12699892)
chr4 (294-355)||(12699696-12699757)
chr4 (298-355)||(51741421-51741478)
[»] chr2 (2 HSPs)
chr2 (255-355)||(24167163-24167264)
chr2 (328-364)||(27499674-27499710)
[»] scaffold0234 (1 HSPs)
scaffold0234 (129-229)||(5099-5199)
[»] chr1 (1 HSPs)
chr1 (129-229)||(9809427-9809527)
[»] chr7 (1 HSPs)
chr7 (318-361)||(31713443-31713486)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 3 - 360
Target Start/End: Original strand, 2598510 - 2598856
Alignment:
Q  3 ggttgagtgagtgaagctttgtattgttaaaaagcgtgaaaactagaagcttgagagaagaattgacaaaattcgtatatctgagtgtgttttcccctat 102  Q
    |||||||||| ||||||||||| |||||||||| |||||||||||||||||| ||| |||||    |||  || ||| |||||||||||||||| | |||    
T  2598510 ggttgagtgattgaagctttgttttgttaaaaaacgtgaaaactagaagctttagaaaagaacattcaagttttgtaaatctgagtgtgttttctcgtat 2598609  T
Q  103 ctatc--cagcacctatgtgaaaatttcactaatattagcaaattgcctccccgtttatattttccctcaagcattagttccactgatgtgaaaactctt 200  Q
    |||||  ||||||||||||||||||||||||||||||| |||||| |  | |||  |||||||||||||| ||||||||||||||||||| |||||||||    
T  2598610 ctatcaccagcacctatgtgaaaatttcactaatattaccaaattac--caccgcatatattttccctcatgcattagttccactgatgtcaaaactctt 2598707  T
Q  201 tagcatttatttttcccctcagtcatttcctcagcatgatgtgaaaaacttcttcaaagttcactaaaatttcaatattgccaccgcatctcttttcccc 300  Q
    ||||||||||||||||| ||||||||||||||| | ||||| ||| |||||| ||||||||| |||||||||||| ||||||||||| | |||||||||     
T  2598708 tagcatttatttttcccttcagtcatttcctcaac-tgatgggaacaacttcatcaaagttcgctaaaatttcaaaattgccaccgcgtgtcttttccct 2598806  T
Q  301 tcaagtatttcttcaccgatgtgaaaaccctgatgtcaaatgtatattttctagtggtga 360  Q
    ||| |||||          |||||||||||||||||||||||||||||||||||| ||||    
T  2598807 tcaggtatt----------tgtgaaaaccctgatgtcaaatgtatattttctagtagtga 2598856  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 128 - 262
Target Start/End: Complemental strand, 12699892 - 12699758
Alignment:
Q  128 cactaatattagcaaattgcctccccgtttatattttccctcaagcatt-agttccactgatgtgaaaactctttagcatttatttttcccctcagtcat 226  Q
    |||||||||||  |||||| | || ||||||| ||||||||||  |||| |||||||| |||||||||||| ||||| || |||| |||| || || |||    
T  12699892 cactaatattacgaaattgtcaccgcgtttatcttttccctcagtcatttagttccacagatgtgaaaactatttagtatctattattcctcttaggcat 12699793  T
Q  227 ttcctcagcatgatgtgaaaaacttcttcaaagttc 262  Q
    ||||||||| || |||||||| ||||| ||||||||    
T  12699792 ttcctcagc-tggtgtgaaaaccttctccaaagttc 12699758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 12699757 - 12699696
Alignment:
Q  294 tttcccctcaagtatttcttcaccgatgtgaaaaccctgatgtcaaatgtatattttctagt 355  Q
    |||||| |||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||    
T  12699757 tttcccttcaagtatttctccactgatgtgaaagccctgatgtcaaatgtaaattttctagt 12699696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 51741478 - 51741421
Alignment:
Q  298 ccctcaagtatttcttcaccgatgtgaaaaccctgatgtcaaatgtatattttctagt 355  Q
    |||||| |||||| | ||| |||||||||||||||||||||||||| | |||||||||    
T  51741478 ccctcatgtatttttgcactgatgtgaaaaccctgatgtcaaatgtcttttttctagt 51741421  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 24167264 - 24167163
Alignment:
Q  255 caaagttcactaaaatttcaatattgccaccgcatctct-tttcccctcaagtatttcttcaccgatgtgaaaaccctgatgtcaaatgtatattttcta 353  Q
    ||||||||||||||||||||| ||||||||||  | | | |||||||||| |||||||| ||| ||||||||| ||||  ||| ||||||||||||||||    
T  24167264 caaagttcactaaaatttcaaaattgccaccgtgtgtatatttcccctcatgtatttctccactgatgtgaaatccctattgttaaatgtatattttcta 24167165  T
Q  354 gt 355  Q
    ||    
T  24167164 gt 24167163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 27499674 - 27499710
Alignment:
Q  328 ccctgatgtcaaatgtatattttctagtggtgaaaga 364  Q
    |||||||||||||||||||||||||| | ||||||||    
T  27499674 ccctgatgtcaaatgtatattttctactagtgaaaga 27499710  T

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Target: scaffold0234 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 5199 - 5099
Alignment:
Q  129 actaatattagcaaattgcctccccgtttatattttccctcaagcattagttccactgatgtgaaaactctttagcatttatttttcccctcagtcattt 228  Q
    ||||||||||  |||||||| || ||||||| ||| |||||| ||||||||||||||||||| |||||||||  || | || |||||||||||| |||||    
T  5199 actaatattacaaaattgccaccgcgtttatgtttcccctcatgcattagttccactgatgtcaaaactcttgggcttctacttttcccctcagccattt 5100  T
Q  229 c 229  Q
    |    
T  5099 c 5099  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 9809427 - 9809527
Alignment:
Q  129 actaatattagcaaattgcctccccgtttatattttccctcaagcattagttccactgatgtgaaaactctttagcatttatttttcccctcagtcattt 228  Q
    ||||||||||  |||||||| || ||||||| ||| |||||| |||||||||||||| |||| ||||||| |  || | ||||||||||||||| |||||    
T  9809427 actaatattacgaaattgccaccgcgtttatgtttcccctcatgcattagttccacttatgtcaaaactcctgggcttctatttttcccctcagccattt 9809526  T
Q  229 c 229  Q
    |    
T  9809527 c 9809527  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 31713486 - 31713443
Alignment:
Q  318 gatgtgaaaaccctgatgtcaaatgtatattttctagtggtgaa 361  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  31713486 gatgtgaaaaccctgatgtcaaatgtatattttctagtagtgaa 31713443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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