View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9260_high_4 (Length: 360)
Name: NF9260_high_4
Description: NF9260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9260_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 27312347 - 27312019
Alignment:
| Q |
16 |
gtacacatggttacatttagggattaaacgcaatgtttcatcgtcttgaaactcattcaaacaaacagcacaagccaatgtgcttttcccgatcttgagt |
115 |
Q |
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| T |
27312347 |
gtacacatggttacatttaggaattaaacgcaatgtttcatcgtcttgaaactcattcaaacaaacagcacaagccaatgtgcttttcccgatcttgagt |
27312248 |
T |
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| Q |
116 |
cccttgacattggagtaacgaaaagttgggaatgtgtctataacttcttggttaagaccattacttggctcgttattttgtgaccggagaccatttgctc |
215 |
Q |
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| T |
27312247 |
cccttgacattggagtaacgaaaagttgggaatgtgtctataacttcttggttaagaccgttacttggctcgttgttttgtgaccggagaccatttgctc |
27312148 |
T |
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| Q |
216 |
cgttaggtaaagtcaggtcaaaaataactccttgttgatgatcggtgcatttagccgagtagagagaaaggaaaccggagaagaggaacataaggactac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27312147 |
cgttaggtaaagtcaggtcaaaaataactccttgttgatgatcggtgcattttgccgagtagagagaaaggaaaccggagaagaggaacataaggactac |
27312048 |
T |
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| Q |
316 |
aattcccattatggtggctactgatctgt |
344 |
Q |
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| T |
27312047 |
aattcccattatggtggctactgatctgt |
27312019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 32965336 - 32965372
Alignment:
| Q |
51 |
tttcatcgtcttgaaactcattcaaacaaacagcaca |
87 |
Q |
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||||||| | ||||||||||||||||||||||||||| |
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| T |
32965336 |
tttcatcttgttgaaactcattcaaacaaacagcaca |
32965372 |
T |
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