View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9260_high_5 (Length: 334)

Name: NF9260_high_5
Description: NF9260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9260_high_5
NF9260_high_5
[»] chr7 (22 HSPs)
chr7 (49-211)||(49042671-49042833)
chr7 (239-323)||(8080373-8080454)
chr7 (240-323)||(38267070-38267150)
chr7 (240-322)||(19436178-19436257)
chr7 (239-323)||(7389418-7389499)
chr7 (239-323)||(19329871-19329952)
chr7 (239-323)||(38837246-38837327)
chr7 (239-324)||(3434591-3434673)
chr7 (239-323)||(3784024-3784105)
chr7 (239-323)||(35137562-35137643)
chr7 (239-331)||(35522905-35522994)
chr7 (239-322)||(36361904-36361984)
chr7 (241-322)||(36362057-36362135)
chr7 (239-323)||(4999504-4999585)
chr7 (240-323)||(3694397-3694477)
chr7 (239-317)||(8238242-8238317)
chr7 (239-323)||(40957736-40957817)
chr7 (260-323)||(32951483-32951543)
chr7 (239-317)||(41915770-41915845)
chr7 (285-323)||(31735949-31735987)
chr7 (239-323)||(46033791-46033872)
chr7 (239-317)||(38044226-38044301)
[»] chr8 (18 HSPs)
chr8 (239-323)||(14547951-14548032)
chr8 (239-323)||(23122587-23122668)
chr8 (239-323)||(15197362-15197443)
chr8 (240-323)||(12831077-12831157)
chr8 (239-323)||(504111-504192)
chr8 (239-323)||(40423933-40424014)
chr8 (239-318)||(15048177-15048252)
chr8 (241-323)||(10621077-10621156)
chr8 (241-323)||(34012286-34012365)
chr8 (239-323)||(5957859-5957940)
chr8 (243-323)||(8841422-8841499)
chr8 (239-323)||(37038508-37038589)
chr8 (239-323)||(43414571-43414652)
chr8 (241-323)||(1179930-1180009)
chr8 (240-317)||(10284627-10284701)
chr8 (241-323)||(44507077-44507156)
chr8 (254-323)||(9122229-9122295)
chr8 (239-323)||(4854853-4854934)
[»] chr1 (20 HSPs)
chr1 (239-331)||(44548358-44548447)
chr1 (239-323)||(8346378-8346459)
chr1 (239-323)||(2581944-2582025)
chr1 (239-323)||(3000348-3000429)
chr1 (239-323)||(9474866-9474947)
chr1 (239-323)||(27564725-27564806)
chr1 (239-323)||(32813276-32813357)
chr1 (239-323)||(38595183-38595264)
chr1 (239-323)||(41758834-41758915)
chr1 (239-320)||(48716275-48716353)
chr1 (240-324)||(26440764-26440845)
chr1 (240-323)||(43162-43242)
chr1 (241-323)||(47452310-47452389)
chr1 (239-323)||(38632311-38632392)
chr1 (239-323)||(50630487-50630568)
chr1 (239-323)||(51898673-51898754)
chr1 (239-322)||(45044551-45044631)
chr1 (240-323)||(49811517-49811597)
chr1 (240-320)||(13414791-13414868)
chr1 (239-317)||(5958996-5959071)
[»] chr6 (13 HSPs)
chr6 (239-323)||(32869707-32869788)
chr6 (239-323)||(22880648-22880729)
chr6 (239-323)||(11427647-11427728)
chr6 (239-323)||(17598583-17598664)
chr6 (239-322)||(29857856-29857936)
chr6 (239-323)||(6209455-6209536)
chr6 (239-323)||(31109390-31109471)
chr6 (239-323)||(31976277-31976358)
chr6 (241-323)||(23128117-23128196)
chr6 (239-322)||(31110752-31110830)
chr6 (241-281)||(946407-946447)
chr6 (239-317)||(4231577-4231652)
chr6 (283-323)||(30870084-30870124)
[»] chr4 (20 HSPs)
chr4 (239-323)||(48183039-48183120)
chr4 (254-331)||(41823926-41824000)
chr4 (239-323)||(29234235-29234316)
chr4 (239-323)||(41236376-41236457)
chr4 (239-323)||(50052418-50052499)
chr4 (240-323)||(480437-480517)
chr4 (239-322)||(11511453-11511533)
chr4 (240-323)||(54473523-54473603)
chr4 (239-323)||(6034073-6034154)
chr4 (240-323)||(31910222-31910302)
chr4 (254-323)||(42044357-42044423)
chr4 (239-323)||(24995097-24995178)
chr4 (239-323)||(29239915-29239996)
chr4 (240-323)||(23608265-23608345)
chr4 (239-317)||(3481683-3481758)
chr4 (239-317)||(29977914-29977989)
chr4 (254-323)||(53352556-53352622)
chr4 (241-323)||(40574810-40574889)
chr4 (239-317)||(55475220-55475295)
chr4 (239-278)||(50526203-50526242)
[»] chr3 (22 HSPs)
chr3 (239-323)||(33644229-33644310)
chr3 (239-323)||(53982040-53982121)
chr3 (239-323)||(31456718-31456799)
chr3 (239-323)||(52629329-52629410)
chr3 (239-324)||(48587080-48587162)
chr3 (239-323)||(17470434-17470515)
chr3 (239-323)||(26141522-26141603)
chr3 (239-323)||(49607443-49607524)
chr3 (239-323)||(54868885-54868966)
chr3 (239-322)||(11095346-11095424)
chr3 (241-322)||(27714882-27714960)
chr3 (243-323)||(8076426-8076503)
chr3 (239-323)||(41189754-41189835)
chr3 (240-323)||(11347912-11347992)
chr3 (240-323)||(51419350-51419430)
chr3 (241-323)||(20764905-20764984)
chr3 (239-323)||(26754724-26754805)
chr3 (240-323)||(33118841-33118921)
chr3 (239-323)||(47531894-47531975)
chr3 (260-323)||(11907421-11907481)
chr3 (240-281)||(36707453-36707494)
chr3 (283-323)||(48375696-48375736)
[»] chr2 (22 HSPs)
chr2 (239-323)||(20700844-20700925)
chr2 (240-323)||(10249372-10249452)
chr2 (239-331)||(7465717-7465806)
chr2 (239-323)||(9058509-9058590)
chr2 (239-323)||(17473049-17473130)
chr2 (239-323)||(28381645-28381726)
chr2 (239-323)||(28863484-28863565)
chr2 (239-323)||(40613892-40613973)
chr2 (240-323)||(13438373-13438453)
chr2 (240-323)||(32505638-32505718)
chr2 (239-323)||(33436090-33436171)
chr2 (239-323)||(38273132-38273213)
chr2 (239-323)||(40701507-40701588)
chr2 (239-323)||(42257222-42257303)
chr2 (239-322)||(5574479-5574559)
chr2 (239-323)||(19930810-19930891)
chr2 (239-323)||(30915492-30915573)
chr2 (240-323)||(4060715-4060795)
chr2 (239-317)||(27864733-27864808)
chr2 (239-323)||(2533153-2533233)
chr2 (285-323)||(36168908-36168946)
chr2 (251-317)||(38732395-38732458)
[»] chr5 (17 HSPs)
chr5 (239-323)||(2740303-2740384)
chr5 (239-323)||(13811681-13811762)
chr5 (239-323)||(18520874-18520955)
chr5 (239-323)||(28177804-28177885)
chr5 (239-323)||(36732932-36733013)
chr5 (239-323)||(6679727-6679808)
chr5 (239-323)||(40145436-40145517)
chr5 (241-323)||(33149628-33149707)
chr5 (250-323)||(15409600-15409670)
chr5 (239-320)||(42414295-42414373)
chr5 (239-323)||(35785228-35785309)
chr5 (239-322)||(26720545-26720625)
chr5 (239-322)||(26990294-26990374)
chr5 (239-323)||(14831843-14831924)
chr5 (239-323)||(35943882-35943963)
chr5 (260-324)||(31132394-31132455)
chr5 (254-322)||(31009032-31009097)
[»] scaffold0237 (1 HSPs)
scaffold0237 (239-322)||(4058-4138)
[»] scaffold0321 (1 HSPs)
scaffold0321 (239-323)||(10099-10180)
[»] scaffold1268 (1 HSPs)
scaffold1268 (239-323)||(919-1000)
[»] scaffold1267 (1 HSPs)
scaffold1267 (239-323)||(919-1000)
[»] scaffold0316 (1 HSPs)
scaffold0316 (260-322)||(17104-17163)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 7e-80; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 49042671 - 49042833
Alignment:
Q  49 taaaagacttgggtatcgttggtttataaagcagagggacttgcgtttggagcaagctcaactgtcatttctttatagggaaaattacaaaatttgtttc 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49042671 taaaagacttgggtatcgttggtttataaagcagagggacttgcgtttggagcaagctcaactgtcatttctttatagggaaaattacaaaatttgcttc 49042770  T
Q  149 aacggaagctgtccctttcctttctttcattattaaatcaaaagtttaaatccattaatcttt 211  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  49042771 aacggaagctgtccctctcctttctttcattattaaatcaaaagtttaaatccattcatcttt 49042833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 8080454 - 8080373
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||||||| ||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  8080454 gcaatacaccctttgacacctacataaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 8080373  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 38267070 - 38267150
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  38267070 caatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 38267150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 240 - 322
Target Start/End: Complemental strand, 19436257 - 19436178
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    ||||||||| ||||||||| ||||||||||||||||||||||   ||| |||| |||||||||||||||||||||||||||||    
T  19436257 caatacaccttttgacacccacacaaaaatctgacacgtagt---cacgtggatcccgcataagcacactttctcttttctct 19436178  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 7389418 - 7389499
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||  ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  7389418 gcaatacactctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 7389499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 19329871 - 19329952
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   ||| |||| ||||||||||| |||||||||||||||||||||||    
T  19329871 gcaatacaccttttgacacccacacaaaaatctgacac---gtaatcacgtggaccccgcacaagcacactttctcttttctctc 19329952  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 38837246 - 38837327
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||  ||||||||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  38837246 gcaatacacccttgtacacctacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 38837327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 3434591 - 3434673
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctct 324  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||   ||| |||| |||||| ||||||||||||||||||||||||    
T  3434591 gcaatacaccctttgacacccacacaaaaaactgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctct 3434673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 3784024 - 3784105
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| | ||||||||| ||||||||||||||||||||||   ||| |||| |||||| |||||||||||||||||||||||    
T  3784024 gcaatacatcttttgacacccacacaaaaatctgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 3784105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 35137562 - 35137643
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||| |||||||||   ||| ||||||||||| || ||||||||||||||||||||    
T  35137562 gcaatacaccctttgacacccacacaaaaatctaacacgtagt---cacgtggaccccgcacaaacacactttctcttttctctc 35137643  T

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Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 35522905 - 35522994
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctctgcttctc 331  Q
    |||||||||||||| ||||| ||||||||||||||||||| |    || ||||| |||||| |||||||||||||||||||||||| ||||||    
T  35522905 gcaatacaccatttaacacccacacaaaaatctgacacgtggc---catatggatcccgcacaagcacactttctcttttctctcttcttctc 35522994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 36361984 - 36361904
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||| | ||||||||| ||||||||||||||||||||||   ||| |||||||| || ||||||||||||||||||||||    
T  36361984 gcaatacatcctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccacacaagcacactttctcttttctct 36361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 36362057 - 36362135
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||| | ||||||||| ||||||||||||||||||||||   ||| |||||||| || ||||||||||||||||||||||    
T  36362057 aatacatcctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccacacaagcacactttctcttttctct 36362135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 4999585 - 4999504
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||| ||   |||||||| ||||||||||| || ||||||||||||||| ||||    
T  4999585 gcaatacaccttttgacacccacacaaaaatctgatac---gtagtcacgtggaccccgcacaaacacactttctcttttatctc 4999504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 3694397 - 3694477
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||| ||| ||||| |||||||||||||||||   |||||||  |||| |||||| |||||||||||||||||||||||    
T  3694397 caatacaccttttaacacccacacaaaaatctgacac---gtagtcatgtggatcccgcacaagcacactttctcttttctctc 3694477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 8238242 - 8238317
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 317  Q
    |||||||||| ||||||||| ||||||||||||||||    ||||||| |||||||||||| ||| |||||||||||||    
T  8238242 gcaatacaccctttgacacccacacaaaaatctgaca---tgtagtcatatggaccccgcacaagtacactttctcttt 8238317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 40957736 - 40957817
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||  ||||| ||| ||||||||||||||||||||||   ||| |||| |||| | |||||||||||||||||||||||    
T  40957736 gcaatacactctttgatacccacacaaaaatctgacacgtagt---cacgtggatcccgtacaagcacactttctcttttctctc 40957817  T

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Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 32951543 - 32951483
Alignment:
Q  260 acacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||||| |||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  32951543 acacaaaaatctaacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 32951483  T

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Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 41915770 - 41915845
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 317  Q
    ||||||||||  |||||||||||||||||||||||||    || | || |||||||||||| ||| |||||||||||||    
T  41915770 gcaatacaccccttgacacctacacaaaaatctgaca---tgtggccatatggaccccgcacaagtacactttctcttt 41915845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 31735949 - 31735987
Alignment:
Q  285 cacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  31735949 cacatggatcccgcacaagcacactttctcttttctctc 31735987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 46033872 - 46033791
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||| ||||| ||| |||||||||||||   || |||||||| || ||||| ||||| | |||||||||||||||    
T  46033872 gcaatacaccctttaacacccacataaaaatctgacac---gtggtcacatgaactccgcacaagcatattttctcttttctctc 46033791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 38044226 - 38044301
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 317  Q
    ||||||||||  |||||| | ||||||||||||||||    |||| || |||||||||||| ||| |||||||||||||    
T  38044226 gcaatacaccccttgacatccacacaaaaatctgaca---tgtagccatatggaccccgcacaagtacactttctcttt 38044301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 14547951 - 14548032
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||||||||||||| |||||||||||||||||   |||||||| ||||||||||| |||||||||||||||||||||||    
T  14547951 gcaatacaccatttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgcacaagcacactttctcttttctctc 14548032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 23122668 - 23122587
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||    
T  23122668 gcaatacaccttttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcataagcacactttctcttttctctc 23122587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 15197362 - 15197443
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  15197362 gcaatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 15197443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 12831077 - 12831157
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  12831077 caatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 12831157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 504192 - 504111
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||||| |||||||| ||||||||||||||    
T  504192 gcaatacaccttttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgcacaagcacacattctcttttctctc 504111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 40424014 - 40423933
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||| | ||||||||||||||||||||||   ||  ||||||||||| |||||||||||||||||||||||    
T  40424014 gcaatacaccctttgacatccacacaaaaatctgacacgtagt---catgtggaccccgcacaagcacactttctcttttctctc 40423933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 15048252 - 15048177
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctctttt 318  Q
    |||||||||| ||||||||| |||||||||||||||||||||    ||||||||||||||| ||||||||||||||||||    
T  15048252 gcaatacaccctttgacacc-acacaaaaatctgacacgtagc---cacatggaccccgcacaagcacactttctctttt 15048177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 10621156 - 10621077
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| ||||||||| |||||||||||||||||   |||| ||||| || |||||| |||||||||||||||||||||||    
T  10621156 aatacaccctttgacacccacacaaaaatctgacac---gtagccacatcgatcccgcacaagcacactttctcttttctctc 10621077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 34012365 - 34012286
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| ||||||||| |||||||||| |||||||||||   ||| |||| |||||| |||||||||||||||||||||||    
T  34012365 aatacaccctttgacacccacacaaaaatttgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 34012286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 5957859 - 5957940
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| |||| |||||| || |||||||||||||| |||||    
T  5957859 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggatcccgcacaatcacactttctctttcctctc 5957940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 8841499 - 8841422
Alignment:
Q  243 tacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||| ||||||||| |||||||||||| |||||||||   ||| ||||||||||| ||||||||||||||||| |||||    
T  8841499 tacaccctttgacacccacacaaaaatctaacacgtagt---cacgtggaccccgcacaagcacactttctctttcctctc 8841422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 37038508 - 37038589
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| |||| |||||| ||||||||||||| ||| |||||    
T  37038508 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggatcccgcacaagcacactttctatttcctctc 37038589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 43414652 - 43414571
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||| ||||| ||||||||| |||||||||||| |||||| ||   |||||||| |||||| |||||||||||||||||||||||    
T  43414652 gcaacacaccctttgacacccacacaaaaatctaacacgtggt---cacatggatcccgcacaagcacactttctcttttctctc 43414571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 1180009 - 1179930
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| ||||||||| ||||||||||||||||||||||   ||  ||||  ||||| |||||||||||||||||||||||    
T  1180009 aatacaccctttgacacccacacaaaaatctgacacgtagt---catgtggattccgcacaagcacactttctcttttctctc 1179930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 10284701 - 10284627
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 317  Q
    ||||||||  ||||||||| |||||||||| |||||||||||   ||| ||||||||||| |||||||||||||||||    
T  10284701 caatacactctttgacacccacacaaaaatttgacacgtagt---cacgtggaccccgcacaagcacactttctcttt 10284627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 44507156 - 44507077
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||  ||| ||||| ||||||||||||||||||||||   ||| ||||||||| | ||||| |||||||||||||||||    
T  44507156 aatacactctttaacacccacacaaaaatctgacacgtagt---cacgtggaccccgtacaagcatactttctcttttctctc 44507077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 9122229 - 9122295
Alignment:
Q  254 acacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||| |||||||||||||||| |||||   ||| |||| |||||| |||||||||||||||||||||||    
T  9122229 acacccacacaaaaatctgacatgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 9122295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 4854934 - 4854853
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||| ||||||||| |||||||||| | || |    ||||||||||| ||| |||||||||||||||||||||||    
T  4854934 gcaatacaccctttaacacctacataaaaatctgatatgtggc---cacatggaccctgcacaagcacactttctcttttctctc 4854853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 44548447 - 44548358
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctctgcttctc 331  Q
    |||||||||||||||| ||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  44548447 gcaatacaccatttgatacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctcttcttctc 44548358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 8346459 - 8346378
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||||||||||||| ||||||||||||||||||   ||||||| ||||||| ||| |||||||||||||||||||||||    
T  8346459 gcaatacaccatttgacacccacacaaaaatctgacacg---tagtcacgtggaccctgcacaagcacactttctcttttctctc 8346378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 2581944 - 2582025
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| ||||||||||| ||||||||||||| |||||||||    
T  2581944 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgcacaagcacactttcttttttctctc 2582025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 3000348 - 3000429
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| ||||||||| | |||||||||||||||||||||||    
T  3000348 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgtacaagcacactttctcttttctctc 3000429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 9474947 - 9474866
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||||| || ||||||||||||||||||||    
T  9474947 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgcacaaacacactttctcttttctctc 9474866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 27564806 - 27564725
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   ||| |||| ||||||||||| |||||||||||||||||||||||    
T  27564806 gcaatacaccttttgacacccacacaaaaatctgacac---gtaatcacgtggaccccgcacaagcacactttctcttttctctc 27564725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 32813276 - 32813357
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||| ||||| ||||||||||||||||||| ||   ||||||||||||||| |||||||||||||||||||||||    
T  32813276 gcaatacaccctttaacacccacacaaaaatctgacacgtggt---cacatggaccccgcacaagcacactttctcttttctctc 32813357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 38595183 - 38595264
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| ||||||||| | |||||||||||||||||||||||    
T  38595183 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgtacaagcacactttctcttttctctc 38595264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 41758834 - 41758915
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||| | |||||||||||||||||||||   |||||||||||||||| || ||||||||||||||||||||    
T  41758834 gcaatacaccctttgacaaccacacaaaaatctgacacgtag---tcacatggaccccgcacaaacacactttctcttttctctc 41758915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 48716353 - 48716275
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttct 320  Q
    |||||||||||||||||| | ||||||||||||||||||   ||||||| ||||||||||| ||||||||||| ||||||||    
T  48716353 gcaatacaccatttgacatccacacaaaaatctgacacg---tagtcacgtggaccccgcacaagcacactttatcttttct 48716275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 26440764 - 26440845
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctct 324  Q
    ||||||||| ||| ||||| ||||||||||||||||||| |    |||||||| |||||||||||||||||||||||||||||||    
T  26440764 caatacaccctttaacacccacacaaaaatctgacacgtggc---cacatggatcccgcataagcacactttctcttttctctct 26440845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 43162 - 43242
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||| | ||||||||| ||||||||||||||||||||||   ||| ||||| ||||| |||||||||||||||||||||||    
T  43162 caatacatcctttgacacccacacaaaaatctgacacgtagt---cacgtggactccgcacaagcacactttctcttttctctc 43242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 47452389 - 47452310
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| ||||||||| |||||||||||| |||||||||   ||| |||| |||||| |||||||||||||||||||||||    
T  47452389 aatacaccctttgacacccacacaaaaatctaacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 47452310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 38632392 - 38632311
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||| ||| | ||||||||||||||||||||||   ||| ||||||||||| ||||||||||| |||||||||||    
T  38632392 gcaatacaccttttaacatccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttttcttttctctc 38632311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 50630487 - 50630568
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| | ||||  ||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  50630487 gcaatacatcctttgttacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 50630568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 51898754 - 51898673
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| |||| |||||| ||||||||||||| ||| |||||    
T  51898754 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggatcccgcacaagcacactttctatttcctctc 51898673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 45044631 - 45044551
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||||||||||||||| | ||||||||||||||    |||| ||||||||||||||| || |||| ||||||||||||||    
T  45044631 gcaatacaccatttgacacccatacaaaaatctgaca---tgtagccacatggaccccgcacaaacacattttctcttttctct 45044551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 49811597 - 49811517
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||||||||||| | |||||||||||||||||||||    || || ||| ||||| |||||||||||||||||||||||    
T  49811597 caatacaccatttgacatccacacaaaaatctgacacgtagc---catatagactccgcacaagcacactttctcttttctctc 49811517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 320
Target Start/End: Original strand, 13414791 - 13414868
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttct 320  Q
    ||||||||| ||||||||| |||||||||||| ||||   |||||||| |||||||| || ||||||| ||||||||||||    
T  13414791 caatacaccctttgacacccacacaaaaatctaacac---gtagtcacgtggaccccacacaagcacattttctcttttct 13414868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 5959071 - 5958996
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 317  Q
    ||||||||||  |||||||| ||||||||||||||||    || |||| |||||||||||| ||| |||||||||||||    
T  5959071 gcaatacacctcttgacacccacacaaaaatctgaca---tgtggtcatatggaccccgcacaagtacactttctcttt 5958996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 32869707 - 32869788
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  32869707 gcaatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 32869788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 22880729 - 22880648
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||| |||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  22880729 gcaatacaccctttgacacccacacaaaattctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 22880648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 11427647 - 11427728
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| | ||||||||| ||||||||||||||||||||||   ||| |||| |||||| |||||||||||||||||||||||    
T  11427647 gcaatacatcctttgacacccacacaaaaatctgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 11427728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 17598583 - 17598664
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| | ||||||||| ||||||||||||||||||| ||   ||| ||||||||||| |||||||||||||||||||||||    
T  17598583 gcaatacatcttttgacacccacacaaaaatctgacacgttgt---cacgtggaccccgcacaagcacactttctcttttctctc 17598664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 29857856 - 29857936
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||||| ||| ||||| |||||||||||||||||   ||||| || |||| |||||||||||||||||||||||||||||    
T  29857856 gcaatacaccttttaacacccacacaaaaatctgacac---gtagttacgtggatcccgcataagcacactttctcttttctct 29857936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 6209536 - 6209455
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||| |||||||||  ||||||||||||| ||||||||   ||| |||||||||||  ||||||||||||||||||||||    
T  6209536 gcaatacactatttgacactcacacaaaaatctgtcacgtagt---cacgtggaccccgcactagcacactttctcttttctctc 6209455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 31109471 - 31109390
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||| | ||||||||||||||||||   ||||||| | ||||||||| ||| |||||||||||||||||||    
T  31109471 gcaatacaccctttgacatccacacaaaaatctgacacg---tagtcacgtagaccccgcaaaagtacactttctcttttctctc 31109390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 31976277 - 31976358
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||| ||| ||| ||||| ||||||||||||||||||| ||   |||||| |||||||| |||||||||||||||||||||||    
T  31976277 gcaatataccctttaacacccacacaaaaatctgacacgtggt---cacatgaaccccgcacaagcacactttctcttttctctc 31976358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 23128196 - 23128117
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||| | ||||||||| ||||||||||||||||||   ||||||| |||| ||| || |||||||||||||||||||||||    
T  23128196 aatacatcctttgacacccacacaaaaatctgacacg---tagtcacgtggatcccacacaagcacactttctcttttctctc 23128117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 31110830 - 31110752
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||||| ||||||||   |||||||||||||||||||     ||||||||||| ||| ||||||||||||||||||||||    
T  31110830 gcaatacaccctttgacact--cacaaaaatctgacacgtaac---cacatggaccctgcacaagcacactttctcttttctct 31110752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 946407 - 946447
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagt 281  Q
    |||||||| |||||||||||| |||||||||||||| ||||    
T  946407 aatacaccctttgacacctacccaaaaatctgacacctagt 946447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 4231577 - 4231652
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 317  Q
    ||||||||||  ||| |||| ||||||||||||||||||| |    || |||||||||||| ||| |||||||||||||    
T  4231577 gcaatacaccccttgccacccacacaaaaatctgacacgtggc---catatggaccccgcacaagtacactttctcttt 4231652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 30870084 - 30870124
Alignment:
Q  283 gtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  30870084 gtcacatggaccccgcacaagcacattttctctttcctctc 30870124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 48183120 - 48183039
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  48183120 gcaatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 48183039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 41823926 - 41824000
Alignment:
Q  254 acacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctctgcttctc 331  Q
    ||||| |||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  41823926 acacccacacaaaaatctgacacgtag---tcacatggaccccgcacaagcacactttctcttttctctcttcttctc 41824000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 29234316 - 29234235
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||| |||| |||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  29234316 gcaatacaccctttgataccttcacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 29234235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 41236376 - 41236457
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||| | ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  41236376 gcaatacaccttttgacatccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 41236457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 50052499 - 50052418
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||||| ||||||||||||||||| |||||    
T  50052499 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgcacaagcacactttctctttcctctc 50052418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 480517 - 480437
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||| | |||||||||||||||||||||||    
T  480517 caatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgtacaagcacactttctcttttctctc 480437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 11511533 - 11511453
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||   ||| ||||||||||| ||||||||||||||||||||||    
T  11511533 gcaatacaccctttgacacccacataaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctct 11511453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 54473603 - 54473523
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||||||||||||| |||||||||||| ||||   |||||||| ||||||||||| ||||||||||| |||||||||||    
T  54473603 caatacaccatttgacacccacacaaaaatctaacac---gtagtcacgtggaccccgcacaagcacactttatcttttctctc 54473523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 6034073 - 6034154
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||| |||||   ||| |||| |||||| |||||||||||||||||||||||    
T  6034073 gcaatacaccctttgacacccacacaaaaatctgacatgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 6034154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 31910222 - 31910302
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||  ||||||||| ||||||||||||||||| |||    ||||||||||||||| |||||||||||||||||||||||    
T  31910222 caatacactctttgacacccacacaaaaatctgacacatagc---cacatggaccccgcacaagcacactttctcttttctctc 31910302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 42044423 - 42044357
Alignment:
Q  254 acacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  42044423 acacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 42044357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 24995178 - 24995097
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||| |||||| |||||||||||   ||| ||||||||||| ||||||| |||||||||||||||    
T  24995178 gcaatacaccctttgacacccacataaaaatttgacacgtagt---cacgtggaccccgcacaagcacattttctcttttctctc 24995097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 29239915 - 29239996
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||||||||||| | |||||||||||| ||||   |||||||| |||||||| || ||||||||||||||||| |||||    
T  29239915 gcaatacaccatttgacatccacacaaaaatctaacac---gtagtcacgtggaccccacacaagcacactttctctttcctctc 29239996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 23608265 - 23608345
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||||||||||||| |||||||||||||||||   |||||||| || || || || |||||||||||||||||| ||||    
T  23608265 caatacaccatttgacacccacacaaaaatctgacac---gtagtcacgtgaactccacacaagcacactttctcttttatctc 23608345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 3481683 - 3481758
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 317  Q
    |||||||||  ||||||||| |||||||||||||||||    ||||||| |||||||| || |||||||||||||||||    
T  3481683 gcaatacactctttgacacccacacaaaaatctgacac---atagtcacgtggaccccacacaagcacactttctcttt 3481758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 29977914 - 29977989
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 317  Q
    ||||||||||  || ||||| |||||||||||||||||   ||||||| ||||||||| || |||||||||||||||||    
T  29977914 gcaatacaccccttaacacccacacaaaaatctgacac---gtagtcatatggaccccacacaagcacactttctcttt 29977989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 53352622 - 53352556
Alignment:
Q  254 acacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||||||||||||||||||||||    |  ||||||||||| ||||| |||||||||||||||||    
T  53352622 acacctacacaaaaatctgacacgtagtt---aagtggaccccgcacaagcatactttctcttttctctc 53352556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 323
Target Start/End: Original strand, 40574810 - 40574889
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| ||||||||| |||||||||||||||||   |  |  ||||||| |||| | |||||||||||||||||||||||    
T  40574810 aatacaccctttgacacccacacaaaaatctgacac---gctgctacatggatcccgaacaagcacactttctcttttctctc 40574889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 55475220 - 55475295
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 317  Q
    |||||||||| ||||||||| ||||||||||||||||    || | || |||||||| ||||||| |||||||||||||    
T  55475220 gcaatacaccctttgacacccacacaaaaatctgaca---tgtggccatatggaccctgcataagtacactttctcttt 55475295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 50526242 - 50526203
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgt 278  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  50526242 gcaatacaccctttgacacccacacaaaaatctgacacgt 50526203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 33644229 - 33644310
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  33644229 gcaatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 33644310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 53982040 - 53982121
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  53982040 gcaatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 53982121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 31456718 - 31456799
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||  ||||||||||| |||||||||||||||||||||||    
T  31456718 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcatgtggaccccgcacaagcacactttctcttttctctc 31456799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 52629329 - 52629410
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| ||||||||| | |||||||||||||||||||||||    
T  52629329 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgtacaagcacactttctcttttctctc 52629410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 48587162 - 48587080
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctct 324  Q
    |||||||||| ||||||||||||| ||||||||||||||   ||||||| |||| |||||| ||| ||||||||||||||||||||    
T  48587162 gcaatacaccctttgacacctacataaaaatctgacacg---tagtcacgtggatcccgcacaagtacactttctcttttctctct 48587080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 17470434 - 17470515
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||   ||| |||||||| || |||||||||||||||||||||||    
T  17470434 gcaatacaccttttaacacccacacaaaaatctgacacgtagt---cacgtggaccccacacaagcacactttctcttttctctc 17470515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 26141603 - 26141522
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||| ||||| ||||||||||||||||||| ||   |||||||||||| || |||||||||||||||||||||||    
T  26141603 gcaatacaccctttaacacccacacaaaaatctgacacgtggt---cacatggaccccacacaagcacactttctcttttctctc 26141522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 49607443 - 49607524
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| |||| ||| || |||||||||||||||||||||||    
T  49607443 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggatcccacacaagcacactttctcttttctctc 49607524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 54868966 - 54868885
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||   |||| || ||||||||||| || ||||||||||||||||||||    
T  54868966 gcaatacaccttttgacacccacacaaaaatctgacacg---tagttacgtggaccccgcacaatcacactttctcttttctctc 54868885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 11095424 - 11095346
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||||| ||||||||| ||||||||||||||||||||||     || | ||||||||||| |||||||||||||||||||    
T  11095424 gcaatacaccctttgacacccacacaaaaatctgacacgtagt-----cacgtaccccgcataaacacactttctcttttctct 11095346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 27714960 - 27714882
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||| ||||||||| ||||||||||||||||||   ||||||  ||||||||||| |||||||||||||||| |||||    
T  27714960 aatacaccctttgacacccacacaaaaatctgacacg---tagtcatgtggaccccgcacaagcacactttctcttctctct 27714882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 323
Target Start/End: Original strand, 8076426 - 8076503
Alignment:
Q  243 tacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||| ||||||||| |||||||||||| |||||||||   ||| ||||||||||| ||||||||||||||||| |||||    
T  8076426 tacaccctttgacacccacacaaaaatctaacacgtagt---cacgtggaccccgcacaagcacactttctctttcctctc 8076503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 41189835 - 41189754
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| ||||||||||| ||| |||||| |||||||| |    ||||||||||||||| |||||||||||||||||||||||    
T  41189835 gcaatacatcatttgacacccacataaaaatttgacacgtggc---cacatggaccccgcacaagcacactttctcttttctctc 41189754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 11347992 - 11347912
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||| | ||||||| | ||||||||||||||||||| |    ||||||||||| |||||||||||||||||||||||||||    
T  11347992 caatacatcctttgacatccacacaaaaatctgacacgtggc---cacatggaccctgcataagcacactttctcttttctctc 11347912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 51419430 - 51419350
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||| | ||| ||||| ||||||||||||||||||| |    ||||| ||||||||| |||||||||||||||||||||||    
T  51419430 caatacatcctttaacacccacacaaaaatctgacacgtggc---cacatagaccccgcacaagcacactttctcttttctctc 51419350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 20764984 - 20764905
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||  ||| ||||| ||||||||||||||||||| |    ||||||||||||| | |||||||||||||||||||||||    
T  20764984 aatacactctttaacacccacacaaaaatctgacacgtggc---cacatggaccccgtacaagcacactttctcttttctctc 20764905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 26754724 - 26754805
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| || |||| | |||||||||||||||| || ||   ||||||||||||||| ||||||| ||||||||| |||||    
T  26754724 gcaatacacccttggacatccacacaaaaatctgacatgtggt---cacatggaccccgcacaagcacattttctctttcctctc 26754805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 33118921 - 33118841
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||| ||||||||| |||||||||| |||||||   ||||||| |||| ||| || || |||||||||||||| |||||    
T  33118921 caatacaccctttgacacccacacaaaaatttgacacg---tagtcacgtggatccctcagaaacacactttctctttcctctc 33118841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 47531894 - 47531975
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||| ||| | |||||| |||||||||||| |    || ||| |||||||| |||||||||||||||||||||||    
T  47531894 gcaatacaccttttaacatccacacaagaatctgacacgtggc---catatgaaccccgcacaagcacactttctcttttctctc 47531975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 11907421 - 11907481
Alignment:
Q  260 acacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||||||||| || ||   || |||||||||||| ||||||| |||||||||||||||    
T  11907421 acacaaaaatctgacatgtggt---catatggaccccgcacaagcacattttctcttttctctc 11907481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 36707494 - 36707453
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagt 281  Q
    ||||||||| ||||||| | ||||||||||||||||||||||    
T  36707494 caatacaccctttgacatccacacaaaaatctgacacgtagt 36707453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 48375736 - 48375696
Alignment:
Q  283 gtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  48375736 gtcacatggaccccgcacaagcacattttctctttcctctc 48375696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 20700844 - 20700925
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| |||||| |||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||| |||||    
T  20700844 gcaatacaccctttgactcctacacaaaaatctgacacgtagt---cacgtggaccccgcataagcacactttctctttcctctc 20700925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 10249452 - 10249372
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  10249452 caatacaccttttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 10249372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 7465806 - 7465717
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctctgcttctc 331  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| |||||||| || |||||||||||||||||| ||||| ||||||    
T  7465806 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggaccccacacaagcacactttctcttttatctcttcttctc 7465717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 9058509 - 9058590
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||  ||||||||||| |||||||||||||||||||||||    
T  9058509 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcatgtggaccccgcacaagcacactttctcttttctctc 9058590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 17473049 - 17473130
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| |||| |||||| |||||||||||||||||||||||    
T  17473049 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggatcccgcacaagcacactttctcttttctctc 17473130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 28381726 - 28381645
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| || |||||| ||||||||||||||||||||||   ||||||||| ||||| |||||||||||||||||||||||    
T  28381726 gcaatacacctttcgacacccacacaaaaatctgacacgtagt---cacatggactccgcacaagcacactttctcttttctctc 28381645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 28863484 - 28863565
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| ||||||||||| |||||||||||||||||| ||||    
T  28863484 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgcacaagcacactttctcttttatctc 28863565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 40613973 - 40613892
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||| |    ||||||||||||||| |||||||||||||||||||||||    
T  40613973 gcaatacaccctttgacacccacacaaaaatctgacacgtggc---cacatggaccccgcacaagcacactttctcttttctctc 40613892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 13438373 - 13438453
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||| | ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  13438373 caatacatcctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 13438453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 32505718 - 32505638
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||||| ||||||||||||| |||||||||    
T  32505718 caatacaccttttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgcacaagcacactttctattttctctc 32505638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 33436171 - 33436090
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||| |||||||||   ||| ||||||||||| ||||||||||||||||| |||||    
T  33436171 gcaatacaccctttgacacccacacaaaaatctaacacgtagt---cacgtggaccccgcacaagcacactttctctttcctctc 33436090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 38273213 - 38273132
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||| ||||| |||||||||||||||||||||    |||||||||||||||  ||||||||||||||||||||||    
T  38273213 gcaatacaccctttaacacccacacaaaaatctgacacgtagc---cacatggaccccgcactagcacactttctcttttctctc 38273132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 40701507 - 40701588
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   ||||| || ||||||||||| || ||||||||||||||||||||    
T  40701507 gcaatacaccttttgacacccacacaaaaatctgacac---gtagttacgtggaccccgcacaatcacactttctcttttctctc 40701588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 42257222 - 42257303
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| ||||||||||| ||| ||||||||||||||| |    ||||||||||||||| |||||||||||||||||||||||    
T  42257222 gcaatacatcatttgacacccacataaaaatctgacacgtggc---cacatggaccccgcacaagcacactttctcttttctctc 42257303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 5574559 - 5574479
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||   ||| |||| |||||| ||||||||||||||||||||||    
T  5574559 gcaatacaccctttgacacccacataaaaatctgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctct 5574479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 19930891 - 19930810
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||| | ||||||||||||||||||   ||||||  ||||||||||| || ||||||||||||||||||||    
T  19930891 gcaatacaccctttgacatccacacaaaaatctgacacg---tagtcatgtggaccccgcacaaacacactttctcttttctctc 19930810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 30915492 - 30915573
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| |||||| || ||| ||||||||||||||||||   ||| ||||||||| | |||||||||||||||||||||||    
T  30915492 gcaatacaccctttgacccccacataaaaatctgacacgtagt---cacgtggaccccgtacaagcacactttctcttttctctc 30915573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 4060715 - 4060795
Alignment:
Q  240 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||| ||||||| | |||||||||||||||||   ||||| || |||| |||||||||||||||||||| |||||||||    
T  4060715 caatacaccttttgacatccacacaaaaatctgacac---gtagttacgtggatcccgcataagcacactttcttttttctctc 4060795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 27864733 - 27864808
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 317  Q
    |||||||||| ||||||| | |||||||||||||||||   ||| |||| ||||||||||| |||||||||||||||||    
T  27864733 gcaatacaccctttgacatccacacaaaaatctgacac---gtaatcacgtggaccccgcaaaagcacactttctcttt 27864808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 2533153 - 2533233
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| | ||||||||| |||||||||||||||||||||    ||||| ||||||||| ||||||||||| |||||| ||||    
T  2533153 gcaatacatcctttgacacc-acacaaaaatctgacacgtagc---cacatagaccccgcacaagcacactttttcttttatctc 2533233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 36168908 - 36168946
Alignment:
Q  285 cacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  36168908 cacatggaccccgcacaagcatactttctcttttctctc 36168946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 38732395 - 38732458
Alignment:
Q  251 ttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 317  Q
    |||||||| |||||||||||||||| || ||   || |||||||||||| ||| |||||||||||||    
T  38732395 ttgacacccacacaaaaatctgacatgtggt---catatggaccccgcacaagtacactttctcttt 38732458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 2740303 - 2740384
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| |||| |||||| |||||||||||||||||||||||    
T  2740303 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggatcccgcacaagcacactttctcttttctctc 2740384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 13811681 - 13811762
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| ||||||||||| |||||||||||||||||   |||||||| ||||||||||| |||||||||||||||| ||||||    
T  13811681 gcaatacatcatttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgcacaagcacactttctcttctctctc 13811762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 18520955 - 18520874
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||||| |||||||||||||||||| ||||    
T  18520955 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgcacaagcacactttctcttttatctc 18520874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 28177804 - 28177885
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||   ||||||||||||||| || ||||||||||||||||||||    
T  28177804 gcaatacaccctttgacacccacacaaaaatctgacacgtggt---cacatggaccccgcacaaacacactttctcttttctctc 28177885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 36733013 - 36732932
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||   ||| ||||||||||| |||||||||||||||||||||||    
T  36733013 gcaatacaccctttgacacccacacaaaaatctgacacatagt---cacgtggaccccgcacaagcacactttctcttttctctc 36732932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 6679727 - 6679808
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   || ||||||||||||||||| || |||| |||||||||||||||    
T  6679727 gcaatacaccttttgacacccacacaaaaatctgacac---gtggtcacatggaccccgcacaaacacattttctcttttctctc 6679808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 40145436 - 40145517
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||| ||| | ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  40145436 gcaatacaccctttaacatccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 40145517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 33149707 - 33149628
Alignment:
Q  241 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| ||||||||| |||||||||| |||||||||||   ||| |||| |||||| |||||||||||||||||||||||    
T  33149707 aatacaccctttgacacccacacaaaaatttgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 33149628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 15409670 - 15409600
Alignment:
Q  250 tttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    ||||||||| |||||||||||||||||||||    ||||||||||||||| ||||||||| |||||||||||||    
T  15409670 tttgacacccacacaaaaatctgacacgtagc---cacatggaccccgcacaagcacactctctcttttctctc 15409600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 42414373 - 42414295
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttct 320  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||  ||||||||||| ||||||||||| ||||||||    
T  42414373 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcatgtggaccccgcacaagcacactttatcttttct 42414295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 35785228 - 35785309
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| |||||||||||||||||   ||||| || |||| |||||| || ||||||||||||||||||||    
T  35785228 gcaatacaccttttgacacccacacaaaaatctgacac---gtagttacgtggatcccgcacaatcacactttctcttttctctc 35785309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 26720545 - 26720625
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||||| ||| ||||||||| ||||||||||||||| |    |||||||| |||||| ||||||||||||||||||||||    
T  26720545 gcaatacaccctttaacacctacaaaaaaatctgacacgtggc---cacatggatcccgcacaagcacactttctcttttctct 26720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 26990294 - 26990374
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||||| ||| ||||||||| ||||||||||||||| |    |||||||| |||||| ||||||||||||||||||||||    
T  26990294 gcaatacaccctttaacacctacaaaaaaatctgacacgtggc---cacatggatcccgcacaagcacactttctcttttctct 26990374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 14831843 - 14831924
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||||||||| ||| |||||||||||||   |||||||| |||| |||||| ||||||||||||| |||| ||||    
T  14831843 gcaatacaccctttgacacccacataaaaatctgacac---gtagtcacgtggatcccgcacaagcacactttcttttttttctc 14831924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 35943963 - 35943882
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| ||||||||||| ||||||||||||||||||   |||| || |||| ||| || ||||||||||||||||| |||||    
T  35943963 gcaatacatcatttgacacccacacaaaaatctgacacg---tagttacgtggatcccacacaagcacactttctctttcctctc 35943882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 31132394 - 31132455
Alignment:
Q  260 acacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctct 324  Q
    ||||||||||||||||   ||||||||| ||||||||||| ||||| ||||| ||||||||||||    
T  31132394 acacaaaaatctgaca---agtagtcacgtggaccccgcacaagcatactttttcttttctctct 31132455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 31009032 - 31009097
Alignment:
Q  254 acacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    ||||| |||||||||||||||||   |||||||| |||| |||||| ||||||||||||| ||| ||||    
T  31009032 acacccacacaaaaatctgacac---gtagtcacgtggatcccgcacaagcacactttctatttcctct 31009097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 4058 - 4138
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||||| ||| ||||| |||||||||||||||||   ||||| || |||| |||||||||||||||||||||||||||||    
T  4058 gcaatacaccttttaacacccacacaaaaatctgacac---gtagttacgtggatcccgcataagcacactttctcttttctct 4138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 10180 - 10099
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||| | ||||||| | ||| ||||||||||||||||||   ||| |||||| || | |||||||||||||||||||||||    
T  10180 gcaatacatcctttgacatccacataaaaatctgacacgtagt---cacgtggaccgcgtacaagcacactttctcttttctctc 10099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 1000 - 919
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||| ||| | ||||||||| ||||||||||||   ||| || | |||||| ||||||||||||||||| |||||    
T  1000 gcaatacaccctttaacatccacacaaaaaactgacacgtagt---cacgtgaatcccgcacaagcacactttctctttcctctc 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 1000 - 919
Alignment:
Q  239 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 323  Q
    |||||||||| ||| ||| | ||||||||| ||||||||||||   ||| || | |||||| ||||||||||||||||| |||||    
T  1000 gcaatacaccctttaacatccacacaaaaaactgacacgtagt---cacgtgaatcccgcacaagcacactttctctttcctctc 919  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 17104 - 17163
Alignment:
Q  260 acacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 322  Q
    |||||||||||||||| || ||   ||||||||||||||| ||||||| ||||||||| ||||    
T  17104 acacaaaaatctgacatgtggt---cacatggaccccgcacaagcacattttctctttcctct 17163  T

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