View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9260_high_6 (Length: 228)
Name: NF9260_high_6
Description: NF9260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9260_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27312436 - 27312658
Alignment:
| Q |
1 |
ccaccgagcctacaatgatatcgaatcagataccagaaggagaagataatcgtcaagaattgagtatacaaatttcaaatgatgaagaagtagaacatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27312436 |
ccaccgagcctacaatgatatcgaatcagataccagaaggagaagataatcgtcaagaattgagtatacaaatttcaaatgatgaagaagtagaacatat |
27312535 |
T |
|
| Q |
101 |
tgttgaagaggaacaaaagaaagccaacgtggaagtggaaaattcacctaaggtagatgtacttcataggtctaaaacatattctgcaccaacacggtca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27312536 |
tgttgaagaggaacaaaagaaagccaacgtggaagtggaaaattcacctaaggtagatgtacttcgtaggtctaaaacatattctgcaccaacacggtca |
27312635 |
T |
|
| Q |
201 |
agatcaacaggattcttatctat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
27312636 |
agatcaacaggattcttatctat |
27312658 |
T |
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