View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9260_low_3 (Length: 573)

Name: NF9260_low_3
Description: NF9260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9260_low_3
NF9260_low_3
[»] chr7 (5 HSPs)
chr7 (4-558)||(41370382-41370924)
chr7 (323-389)||(22197875-22197941)
chr7 (323-389)||(22239880-22239946)
chr7 (335-389)||(45003050-45003104)
chr7 (335-389)||(45613995-45614049)
[»] scaffold0009 (1 HSPs)
scaffold0009 (323-389)||(102994-103060)
[»] chr6 (6 HSPs)
chr6 (323-389)||(17249458-17249524)
chr6 (323-389)||(3137400-3137466)
chr6 (343-389)||(959489-959535)
chr6 (323-389)||(7749369-7749435)
chr6 (339-389)||(32115622-32115672)
chr6 (323-389)||(34168809-34168874)
[»] chr4 (5 HSPs)
chr4 (323-389)||(3329884-3329950)
chr4 (335-389)||(39001297-39001351)
chr4 (325-389)||(53619476-53619540)
chr4 (323-389)||(4419152-4419217)
chr4 (323-387)||(50001081-50001145)
[»] chr1 (6 HSPs)
chr1 (323-389)||(30688445-30688511)
chr1 (323-389)||(5453983-5454049)
chr1 (335-389)||(7483784-7483838)
chr1 (335-389)||(34644466-34644520)
chr1 (323-387)||(1114023-1114087)
chr1 (323-375)||(7213131-7213183)
[»] chr5 (3 HSPs)
chr5 (324-387)||(2566250-2566313)
chr5 (326-388)||(15506769-15506831)
chr5 (335-389)||(23023495-23023549)
[»] chr8 (4 HSPs)
chr8 (323-389)||(22589489-22589555)
chr8 (323-389)||(38815182-38815248)
chr8 (326-389)||(39434558-39434621)
chr8 (325-385)||(18804503-18804563)
[»] chr3 (5 HSPs)
chr3 (323-389)||(26772646-26772712)
chr3 (323-389)||(32546683-32546749)
chr3 (360-394)||(3443460-3443494)
chr3 (335-389)||(38671033-38671087)
chr3 (327-389)||(39583382-39583444)
[»] chr2 (1 HSPs)
chr2 (323-389)||(41868061-41868126)


Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 4 - 558
Target Start/End: Complemental strand, 41370924 - 41370382
Alignment:
Q  4 tcatcaacatcgccgacatatccctctccctcaccgagcaaactagggttttccatagcgatctagggtttctcttcgccgcggcttaacccttcttata 103  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41370924 tcatcaacatcgctgacatatccctctccctcaccgagcaaactagggttttccatagcgatctagggtttctcttcgccgcggcttaacccttcttata 41370825  T
Q  104 caatcctccttcctcagaattaaagtttgatcatctcttctagaaattacaactatgagagtcccaacaaataaccttggatcacggcttttacgaatct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41370824 caatcctccttcctcagaattaaagtttgatcatctcttctagaaattacaactatgagagtcccaacaaataaccttggatcacggcttttacgaatct 41370725  T
Q  204 taaatatgaatcttggacatagagggaaaggtgaaagaatcttggccattccttgacaatgttattaattagttgactataagataagatgcttaggtat 303  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41370724 taactatgaatcttggacatagagggaaaggtgaaagaatcttggccattccttgacaatgttattaattagttgactataagataagatgcttaggtat 41370625  T
Q  304 gttatatacattacacattcgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattcaaagataagtatgac 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  41370624 gttatatacattacacattcgggcaacaggttgcgccgctaggcctttttagatgccaaaaccaatcattgtaaaaacaacattcaaagataagtatgac 41370525  T
Q  404 attcctttaaaaatgta--tannnnnnnnctcttttaagaaacttaaaagttttagtatcatatcatatctattaacaaacaagatttagaaacaagagt 501  Q
    |||||||||||||||||  |         |||||||||||||||| |||||||||||||||||||||||||||||||             ||||||||||    
T  41370524 attcctttaaaaatgtattttttttttttctcttttaagaaactt-aaagttttagtatcatatcatatctattaac-------------aaacaagagt 41370439  T
Q  502 tatatatgtttgattgaaacacaataatgagaaacactaatagtttttatgataact 558  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41370438 tatatatgtttgattgaaacacaataatgagaaacactaatagtttttatgataact 41370382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 22197875 - 22197941
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| ||||| |||| | ||||||||  ||| ||||| |||| |||||||||||||||||||    
T  22197875 cgggcaacaagttgcaccgccaagcctttttggatgacaaaatcaattatcgtaaacacaacattca 22197941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 22239946 - 22239880
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| ||||| |||| | ||||||||  ||| ||||| |||| |||||||||||||||||||    
T  22239946 cgggcaacaagttgcaccgccaagcctttttggatgacaaaatcaattatcgtaaacacaacattca 22239880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 45003104 - 45003050
Alignment:
Q  335 tgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||||| |||||||  ||| ||||| ||||| ||||||||||||||||||    
T  45003104 tgcgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacattca 45003050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 45614049 - 45613995
Alignment:
Q  335 tgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||||| ||||||   ||| ||||||||||| ||||||||||||||||||    
T  45614049 tgcgccgctagaccttttcggatggcaaaaccaatcctcgtaaacacaacattca 45613995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 102994 - 103060
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| ||||||||||||| |||||||  ||| ||||||||||| ||||||||||||||||||    
T  102994 cgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaacattca 103060  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 17249524 - 17249458
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| | ||||||||||| |||||||  ||| ||||||||||| ||||||||||||||||||    
T  17249524 cgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaacattca 17249458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 3137466 - 3137400
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| ||||| | |||| ||||||||  ||| ||||||||||| ||||||||||||||||||    
T  3137466 cgggcaacaagttgcactgctaagcctttttggatggcaaaaccaatcctcgtaaacacaacattca 3137400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 959489 - 959535
Alignment:
Q  343 taggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    |||||||||||| ||| ||||| ||||| ||||||||||||||||||    
T  959489 taggcctttttagatgacaaaatcaatcctcgtaaacacaacattca 959535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 7749369 - 7749435
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| | ||| ||||||| ||||||   ||| ||||||||||| ||||||||||||||||||    
T  7749369 cgggcaacaagctgcaccgctagaccttttaggatggcaaaaccaatcctcgtaaacacaacattca 7749435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 389
Target Start/End: Original strand, 32115622 - 32115672
Alignment:
Q  339 ccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||| |||||||| ||  ||||| ||||||||||||||||||||||||    
T  32115622 ccgctagacctttttagatagcaaaatcaatcatcgtaaacacaacattca 32115672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 34168809 - 34168874
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||| ||| |||||||||||||||||||||  ||  ||||||||||| |||| |||||||||||||    
T  34168809 cgggcgacaagttgcgccgctaggcctttttggatagcaaaaccaatcctcgt-aacacaacattca 34168874  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 3329884 - 3329950
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| | ||||||||||| |||||||  ||| ||||||||||||||||||||||| ||||||    
T  3329884 cgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcatcgtaaacacagcattca 3329950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 39001297 - 39001351
Alignment:
Q  335 tgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||||| |||||||  ||| ||||||||||| ||||||||||||||||||    
T  39001297 tgcgccgctagacctttttggatgacaaaaccaatcctcgtaaacacaacattca 39001351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 53619476 - 53619540
Alignment:
Q  325 ggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||| | ||||||||||| |||||||  ||| ||||||||||  ||||||||||||||||||    
T  53619476 ggcaacaagctgcgccgctagacctttttggatggcaaaaccaattctcgtaaacacaacattca 53619540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 4419152 - 4419217
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| | |||||||||||   |||||  ||| ||||||||||||||||||||||||||||||    
T  4419152 cgggcaacaagctgcgccgctagat-tttttggatggcaaaaccaatcatcgtaaacacaacattca 4419217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 50001145 - 50001081
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacatt 387  Q
    ||||||||| | |||||||||||  ||||||  ||| ||||| ||||| ||||||||||||||||    
T  50001145 cgggcaacaagctgcgccgctagatctttttggatggcaaaatcaatcttcgtaaacacaacatt 50001081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 30688445 - 30688511
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| | |||||||||||||||||||  ||  ||||||||||| ||||||||||||||||||    
T  30688445 cgggcaacaagctgcgccgctaggcctttttggataacaaaaccaatcctcgtaaacacaacattca 30688511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 5453983 - 5454049
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| | ||||||||||| |||||||  ||| ||||||||||| | ||||||||||||||||    
T  5453983 cgggcaacaagctgcgccgctagacctttttggatgacaaaaccaatccttgtaaacacaacattca 5454049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 7483784 - 7483838
Alignment:
Q  335 tgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    |||||||||| ||||||||| ||| |||||| |||| ||||||||||||||||||    
T  7483784 tgcgccgctaagcctttttagatggcaaaactaatcttcgtaaacacaacattca 7483838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 34644466 - 34644520
Alignment:
Q  335 tgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||||| | |||||  ||| ||||| ||||||||||||||||||||||||    
T  34644466 tgcgccgctagacttttttggatggcaaaatcaatcatcgtaaacacaacattca 34644520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 1114087 - 1114023
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacatt 387  Q
    ||||||||| | || |||| ||| |||||||  ||| ||||||||||| ||||||||||||||||    
T  1114087 cgggcaacaagctgtgccgttagacctttttggatggcaaaaccaatcctcgtaaacacaacatt 1114023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 7213131 - 7213183
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgt 375  Q
    ||||||||| ||||||||||||| |||||||  |||  |||||||||||||||    
T  7213131 cgggcaacaagttgcgccgctagacctttttggatggtaaaaccaatcatcgt 7213183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 2566313 - 2566250
Alignment:
Q  324 gggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacatt 387  Q
    |||||||| ||||||||||||| |||||||  ||| ||||| ||||| ||||||||||||||||    
T  2566313 gggcaacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacatt 2566250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 15506831 - 15506769
Alignment:
Q  326 gcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattc 388  Q
    |||||| ||||||||| |||||||||||  |||  |||| ||||| |||||||||||||||||    
T  15506831 gcaacaagttgcgccgttaggccttttttgatggtaaaatcaatcctcgtaaacacaacattc 15506769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 23023495 - 23023549
Alignment:
Q  335 tgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    |||||| ||||||||||||  ||| ||||| ||||| ||||||||||||||||||    
T  23023495 tgcgcccctaggcctttttggatgacaaaatcaatcttcgtaaacacaacattca 23023549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 22589555 - 22589489
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| | ||||||||||| |||||||  ||| ||||||||||| |||| |||||||||||||    
T  22589555 cgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaacattca 22589489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 38815182 - 38815248
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| | |||||||||| ||||||||  |||  |||||||||| ||||||||||||||||||    
T  38815182 cgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaacattca 38815248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 39434558 - 39434621
Alignment:
Q  326 gcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    |||||| | ||||||||||| |||||||  ||| ||||| ||||| ||||||||||||||||||    
T  39434558 gcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattca 39434621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 18804503 - 18804563
Alignment:
Q  325 ggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaaca 385  Q
    ||||||| | ||||||||||| |||||||  ||| ||||||||||| ||||||||| ||||    
T  18804503 ggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacaaaaca 18804563  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 26772646 - 26772712
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| | ||||||||||| |||||||  ||| ||||| ||||| ||||||||||||||||||    
T  26772646 cgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattca 26772712  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 32546683 - 32546749
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| | ||||||||||| |||||||  ||| ||||||||||| |||| |||||||||||||    
T  32546683 cgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaacattca 32546749  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 394
Target Start/End: Complemental strand, 3443494 - 3443460
Alignment:
Q  360 caaaaccaatcatcgtaaacacaacattcaaagat 394  Q
    |||||||||||||||||||||||||||||| ||||    
T  3443494 caaaaccaatcatcgtaaacacaacattcatagat 3443460  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 38671087 - 38671033
Alignment:
Q  335 tgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||||| | |||||| ||| ||||||||||| ||||| ||||||||||||    
T  38671087 tgcgccgctagacttttttagatggcaaaaccaatcctcgtacacacaacattca 38671033  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 39583444 - 39583382
Alignment:
Q  327 caacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||| ||||||||||||| |||||||  ||| ||||| ||||| |||||||||| |||||||    
T  39583444 caacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacgacattca 39583382  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 41868126 - 41868061
Alignment:
Q  323 cgggcaacaggttgcgccgctaggcctttttacatgccaaaaccaatcatcgtaaacacaacattca 389  Q
    ||||||||| |||||||||||||  ||||||   || ||||||||||| ||||||||||||||||||    
T  41868126 cgggcaacaagttgcgccgctagatctttttgg-tggcaaaaccaatcctcgtaaacacaacattca 41868061  T

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