View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9260_low_6 (Length: 493)
Name: NF9260_low_6
Description: NF9260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9260_low_6 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 3 - 360
Target Start/End: Original strand, 2598510 - 2598856
Alignment:
| Q |
3 |
ggttgagtgagtgaagctttgtattgttaaaaagcgtgaaaactagaagcttgagagaagaattgacaaaattcgtatatctgagtgtgttttcccctat |
102 |
Q |
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|||||||||| ||||||||||| |||||||||| |||||||||||||||||| ||| ||||| ||| || ||| |||||||||||||||| | ||| |
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| T |
2598510 |
ggttgagtgattgaagctttgttttgttaaaaaacgtgaaaactagaagctttagaaaagaacattcaagttttgtaaatctgagtgtgttttctcgtat |
2598609 |
T |
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| Q |
103 |
ctatc--cagcacctatgtgaaaatttcactaatattagcaaattgcctccccgtttatattttccctcaagcattagttccactgatgtgaaaactctt |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||| | | ||| |||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
2598610 |
ctatcaccagcacctatgtgaaaatttcactaatattaccaaattac--caccgcatatattttccctcatgcattagttccactgatgtcaaaactctt |
2598707 |
T |
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| Q |
201 |
tagcatttatttttcccctcagtcatttcctcagcatgatgtgaaaaacttcttcaaagttcactaaaatttcaatattgccaccgcatctcttttcccc |
300 |
Q |
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||||||||||||||||| ||||||||||||||| | ||||| ||| |||||| ||||||||| |||||||||||| ||||||||||| | ||||||||| |
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| T |
2598708 |
tagcatttatttttcccttcagtcatttcctcaac-tgatgggaacaacttcatcaaagttcgctaaaatttcaaaattgccaccgcgtgtcttttccct |
2598806 |
T |
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| Q |
301 |
tcaagtatttcttcaccgatgtgaaaaccctgatgtcaaatgtatattttctagtggtga |
360 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
2598807 |
tcaggtatt----------tgtgaaaaccctgatgtcaaatgtatattttctagtagtga |
2598856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 128 - 262
Target Start/End: Complemental strand, 12699892 - 12699758
Alignment:
| Q |
128 |
cactaatattagcaaattgcctccccgtttatattttccctcaagcatt-agttccactgatgtgaaaactctttagcatttatttttcccctcagtcat |
226 |
Q |
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| T |
12699892 |
cactaatattacgaaattgtcaccgcgtttatcttttccctcagtcatttagttccacagatgtgaaaactatttagtatctattattcctcttaggcat |
12699793 |
T |
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| Q |
227 |
ttcctcagcatgatgtgaaaaacttcttcaaagttc |
262 |
Q |
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| T |
12699792 |
ttcctcagc-tggtgtgaaaaccttctccaaagttc |
12699758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 12699757 - 12699696
Alignment:
| Q |
294 |
tttcccctcaagtatttcttcaccgatgtgaaaaccctgatgtcaaatgtatattttctagt |
355 |
Q |
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|||||| |||||||||||| ||| ||||||||| ||||||||||||||||| |||||||||| |
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| T |
12699757 |
tttcccttcaagtatttctccactgatgtgaaagccctgatgtcaaatgtaaattttctagt |
12699696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 51741478 - 51741421
Alignment:
| Q |
298 |
ccctcaagtatttcttcaccgatgtgaaaaccctgatgtcaaatgtatattttctagt |
355 |
Q |
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| T |
51741478 |
ccctcatgtatttttgcactgatgtgaaaaccctgatgtcaaatgtcttttttctagt |
51741421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 24167264 - 24167163
Alignment:
| Q |
255 |
caaagttcactaaaatttcaatattgccaccgcatctct-tttcccctcaagtatttcttcaccgatgtgaaaaccctgatgtcaaatgtatattttcta |
353 |
Q |
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||||||||||||||||||||| |||||||||| | | | |||||||||| |||||||| ||| ||||||||| |||| ||| |||||||||||||||| |
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| T |
24167264 |
caaagttcactaaaatttcaaaattgccaccgtgtgtatatttcccctcatgtatttctccactgatgtgaaatccctattgttaaatgtatattttcta |
24167165 |
T |
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| Q |
354 |
gt |
355 |
Q |
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|| |
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|
| T |
24167164 |
gt |
24167163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 27499674 - 27499710
Alignment:
| Q |
328 |
ccctgatgtcaaatgtatattttctagtggtgaaaga |
364 |
Q |
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|||||||||||||||||||||||||| | |||||||| |
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| T |
27499674 |
ccctgatgtcaaatgtatattttctactagtgaaaga |
27499710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 5199 - 5099
Alignment:
| Q |
129 |
actaatattagcaaattgcctccccgtttatattttccctcaagcattagttccactgatgtgaaaactctttagcatttatttttcccctcagtcattt |
228 |
Q |
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|||||||||| |||||||| || ||||||| ||| |||||| ||||||||||||||||||| ||||||||| || | || |||||||||||| ||||| |
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| T |
5199 |
actaatattacaaaattgccaccgcgtttatgtttcccctcatgcattagttccactgatgtcaaaactcttgggcttctacttttcccctcagccattt |
5100 |
T |
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| Q |
229 |
c |
229 |
Q |
| |
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| |
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| T |
5099 |
c |
5099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 9809427 - 9809527
Alignment:
| Q |
129 |
actaatattagcaaattgcctccccgtttatattttccctcaagcattagttccactgatgtgaaaactctttagcatttatttttcccctcagtcattt |
228 |
Q |
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|||||||||| |||||||| || ||||||| ||| |||||| |||||||||||||| |||| ||||||| | || | ||||||||||||||| ||||| |
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| T |
9809427 |
actaatattacgaaattgccaccgcgtttatgtttcccctcatgcattagttccacttatgtcaaaactcctgggcttctatttttcccctcagccattt |
9809526 |
T |
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| Q |
229 |
c |
229 |
Q |
| |
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| T |
9809527 |
c |
9809527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 31713486 - 31713443
Alignment:
| Q |
318 |
gatgtgaaaaccctgatgtcaaatgtatattttctagtggtgaa |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31713486 |
gatgtgaaaaccctgatgtcaaatgtatattttctagtagtgaa |
31713443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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