View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_high_12 (Length: 443)
Name: NF9261_high_12
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 42859796 - 42860191
Alignment:
| Q |
15 |
tgtggcaatgtgagtatgcttgtaagaaaaggaagccataagcaaggttcataaatggagcatcagccaaaataaacnnnnnnnncagtatagtgtggcg |
114 |
Q |
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| T |
42859796 |
tgtggcaatgtgagtatgcttgtaagaaaaggaagccataagcaaggttcataaatggagcatcagccaaaataaacaaaaaaa-cagtatagtgtggcg |
42859894 |
T |
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| Q |
115 |
cacaattagaccacaatcataccaataaactatgaactagtttatcacgggtcaaatattttgtctagcattgaaaaaatattgctatcaaatacggaga |
214 |
Q |
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| T |
42859895 |
cacaattagaccacaatcataccaataaactatgaactagtttatcacgggtcaaatatt--gtctagcattgaaaaaatattgctatcaaatacggaga |
42859992 |
T |
|
| Q |
215 |
ggatacattaggatttgtttgtaaatatctgtagggaaaatatgtgcaataatcaaattagatcaaatcaaaaccgttccagtttcaataagttccaaac |
314 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42859993 |
ggatacattaggatttgtttgtaaat---------------atgtgcaataatcaaattagatcaaatcaaaaccgttccagtttcaataagttccaaac |
42860077 |
T |
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| Q |
315 |
ataaagagttgattttccaaaatctaaatcaaataaaattatcactcaaacactgtcctaaatttaacatgtctgatctatattttccttcctttgaatt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42860078 |
ataaagagttgattttccaaaatctaaatcaaataaaattatcactcaaacactgtcctaaatttaacatgtctgatctatattttccttcctttgaatt |
42860177 |
T |
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