View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_high_13 (Length: 429)
Name: NF9261_high_13
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 6 - 381
Target Start/End: Original strand, 8342666 - 8343041
Alignment:
| Q |
6 |
ttcacttttatggatcatcatcacctaaactgatttgtccatgaagcatctgtctttctattataaactgatttgtattaatataagttacatctgttcg |
105 |
Q |
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| T |
8342666 |
ttcacttttatggatcatcatcacctaaactgatttgtccatgaagcatctgtctttctattataaactgatttgtattaatgtaagttacatctgttcg |
8342765 |
T |
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| Q |
106 |
agtttcagagaaaactttccctcttgaagtactcagatcaagttttctctgatgatttggctttactacaaagaggatatgggagcaaaacgtataatat |
205 |
Q |
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| T |
8342766 |
agtttcagagaaaactttccctcttgaagtactcagatcaagttttctctgatgatttggctttactacaaagaggatatgggagcaaaacgtataatat |
8342865 |
T |
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| Q |
206 |
gtattttgcatttcatcaggttcaaaactctcttgtattttgacaactactatttatttccatatttttgtatattaatatcaggacatggtacacaagg |
305 |
Q |
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| T |
8342866 |
gtattttgcatttcatcaggttcaaaactctcttgtattttgacaactactatttatttccatatttttgtatattaatatcaggacatggtaaacaagg |
8342965 |
T |
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| Q |
306 |
aaaagttcttgaaattgtgtcctgttcttttgtgtagaacacgaaaagtcatctaagtatttgtctaattttcacc |
381 |
Q |
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| T |
8342966 |
aaaagttcttgaaattgtgtcttgttcttttgtgtagaacaagaaaagtcatctaagtatttgtctaattttcacc |
8343041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 8343443 - 8343483
Alignment:
| Q |
373 |
attttcaccttaaaatatagatttttcaatcacttgcttat |
413 |
Q |
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| T |
8343443 |
attttcaccttaaaatatagatttttcaatcacttgcttat |
8343483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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