View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9261_high_19 (Length: 315)

Name: NF9261_high_19
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9261_high_19
NF9261_high_19
[»] chr3 (15 HSPs)
chr3 (14-315)||(1902036-1902338)
chr3 (14-315)||(1911482-1911784)
chr3 (84-311)||(35864107-35864334)
chr3 (26-290)||(21984209-21984474)
chr3 (107-257)||(11027175-11027325)
chr3 (98-299)||(7729708-7729908)
chr3 (132-269)||(31339880-31340017)
chr3 (54-225)||(54393254-54393428)
chr3 (13-300)||(10480321-10480611)
chr3 (74-216)||(52259689-52259831)
chr3 (12-116)||(44441594-44441699)
chr3 (113-231)||(49600729-49600847)
chr3 (113-216)||(34962274-34962377)
chr3 (246-315)||(44441778-44441847)
chr3 (113-174)||(44111249-44111310)
[»] chr2 (8 HSPs)
chr2 (54-315)||(28528962-28529223)
chr2 (98-300)||(44718840-44719040)
chr2 (142-274)||(42530893-42531033)
chr2 (98-170)||(42071417-42071489)
chr2 (71-192)||(21490265-21490384)
chr2 (246-315)||(42071527-42071596)
chr2 (113-190)||(7813549-7813624)
chr2 (118-231)||(947379-947492)
[»] chr6 (6 HSPs)
chr6 (57-297)||(6822518-6822758)
chr6 (120-297)||(18250755-18250933)
chr6 (200-315)||(11769788-11769903)
chr6 (76-175)||(33106823-33106920)
chr6 (76-231)||(6901536-6901697)
chr6 (227-300)||(33106750-33106823)
[»] chr5 (10 HSPs)
chr5 (13-300)||(15810660-15810948)
chr5 (13-297)||(15726816-15727100)
chr5 (26-290)||(29368448-29368713)
chr5 (127-300)||(4930660-4930832)
chr5 (18-171)||(22399404-22399557)
chr5 (117-167)||(17229004-17229054)
chr5 (213-255)||(38351726-38351768)
chr5 (213-274)||(17228914-17228975)
chr5 (106-150)||(27343174-27343218)
chr5 (98-140)||(40909995-40910037)
[»] chr8 (11 HSPs)
chr8 (66-274)||(40381594-40381802)
chr8 (31-260)||(42163974-42164204)
chr8 (22-302)||(3310494-3310775)
chr8 (54-269)||(37728356-37728571)
chr8 (142-310)||(14539421-14539589)
chr8 (18-109)||(1336109-1336201)
chr8 (113-185)||(2537200-2537272)
chr8 (76-231)||(12585655-12585810)
chr8 (18-180)||(16340159-16340319)
chr8 (246-315)||(1336280-1336349)
chr8 (118-220)||(15356060-15356162)
[»] chr1 (17 HSPs)
chr1 (62-292)||(30294091-30294321)
chr1 (18-300)||(27850394-27850678)
chr1 (115-311)||(21487333-21487530)
chr1 (85-192)||(37244915-37245022)
chr1 (12-116)||(46396620-46396725)
chr1 (156-227)||(5200333-5200404)
chr1 (18-119)||(1282175-1282277)
chr1 (18-119)||(1283206-1283308)
chr1 (113-173)||(29095842-29095902)
chr1 (246-315)||(46396472-46396541)
chr1 (240-290)||(42773370-42773420)
chr1 (143-180)||(42772340-42772377)
chr1 (240-315)||(37245038-37245114)
chr1 (165-232)||(42772392-42772459)
chr1 (152-225)||(1282281-1282354)
chr1 (152-225)||(1283312-1283385)
chr1 (113-194)||(31570500-31570581)
[»] chr7 (4 HSPs)
chr7 (27-308)||(23756507-23756791)
chr7 (76-231)||(22972847-22973002)
chr7 (113-230)||(33758395-33758512)
chr7 (118-175)||(33338293-33338348)
[»] chr4 (10 HSPs)
chr4 (21-225)||(47551993-47552200)
chr4 (124-300)||(13035532-13035704)
chr4 (54-311)||(22087653-22087913)
chr4 (113-216)||(46732653-46732755)
chr4 (74-220)||(27907223-27907367)
chr4 (22-116)||(26333241-26333336)
chr4 (200-264)||(35747008-35747072)
chr4 (18-231)||(13028605-13028815)
chr4 (114-197)||(24368009-24368092)
chr4 (115-181)||(6495746-6495814)
[»] scaffold0245 (2 HSPs)
scaffold0245 (18-119)||(7855-7957)
scaffold0245 (152-225)||(7961-8034)
[»] scaffold0229 (2 HSPs)
scaffold0229 (18-119)||(8183-8285)
scaffold0229 (152-225)||(8289-8362)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 1902338 - 1902036
Alignment:
Q  14 cagagacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactta 112  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1902338 cagagaaggatccaggatttttgaatagtgggtgcaccatatataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactta 1902239  T
Q  113 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1902238 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccg 1902139  T
Q  213 attcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtgggggccatgtga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  1902138 attcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtagaccaaaagagaaatgatttatgataagtgggggccatgtga 1902039  T
Q  313 tca 315  Q
    |||    
T  1902038 tca 1902036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 1911784 - 1911482
Alignment:
Q  14 cagagacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactta 112  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1911784 cagagaaggatccaggatttttgaatagtgggtgcaccatatataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactta 1911685  T
Q  113 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1911684 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccg 1911585  T
Q  213 attcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtgggggccatgtga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  1911584 attcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtagaccaaaagagaaatgatttatgataagtgggggccatgtga 1911485  T
Q  313 tca 315  Q
    |||    
T  1911484 tca 1911482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 84 - 311
Target Start/End: Complemental strand, 35864334 - 35864107
Alignment:
Q  84 tttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaa-tatctttctctatataaataactaaacaatgatttaa 182  Q
    ||||||||||||| ||||||||||||||  ||||||||| | |||||||||| ||| || || |||||||||||||||||| ||||||||||| ||||||    
T  35864334 tttatgatttttcatattatggaaactttcaatgatttttttattttcaata-caaggagaagtatctttctctatataaacaactaaacaatcatttaa 35864236  T
Q  183 ccaatcatctttcatttgatttcgcatccgattcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagaga 282  Q
    || ||||||| |||||  ||||||||| | | ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||    
T  35864235 ccgatcatctctcattcaatttcgcattcaaatcttgataaaattcatattatcaagaaagaatttgagatatatgatgatatgtgtaggccaaaagaga 35864136  T
Q  283 aatgatttatgataagtgggggccatgtg 311  Q
    |||||||| ||||||||| |||| |||||    
T  35864135 aatgatttgtgataagtgagggcaatgtg 35864107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 290
Target Start/End: Complemental strand, 21984474 - 21984209
Alignment:
Q  26 caggatttttgaatagtgggtgca-catttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttct 124  Q
    |||||||||||| || |||| ||| ||| ||||||||||| ||||| ||||||||||||| ||  ||||||| |||||| ||||||| ||||| ||||||    
T  21984474 caggatttttgattattgggggcatcatatataaaaatttgtagcattaataattgtcctctagaatttttcatattattgaaactttgaatggttttct 21984375  T
Q  125 cattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataat 224  Q
    |||||||||||||||| ||| ||| ||||| |||||||||||   |||||| |||||||| |||||||  |||| ||||  | ||||| |||||||||||    
T  21984374 cattttcaatatcaataaaagtatatttctttatataaataatcgaacaatcatttaaccgatcatctcacattcgattatgtatccggttcttgataat 21984275  T
Q  225 attcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgattt 290  Q
    ||||||||| | || |||||||||||||||||||||||||| |||  ||| | |||||||||||||    
T  21984274 attcatattatcaataaagaatttgagatatatgatgatatatgtgagccaagagagaaatgattt 21984209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 11027325 - 11027175
Alignment:
Q  107 aacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcg 206  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||| | ||||||||||||||||| ||| |||||| || |||||| ||||| ||||||     
T  11027325 aactttgaatgattttatcattttcaatatcaataaaaatatcttacactatataaataactaaataattatttaagcagtcatctctcattcgatttca 11027226  T
Q  207 catccgattcttgataatattcatatttttaagaaagaatttgagatatat 257  Q
    ||| ||||||||||||||||||||||| | |||||| || |||||||||||    
T  11027225 cattcgattcttgataatattcatattatgaagaaaaaagttgagatatat 11027175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 299
Target Start/End: Complemental strand, 7729908 - 7729708
Alignment:
Q  98 tattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcat 197  Q
    ||||||||||| || ||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||     ||||  ||     
T  7729908 tattatggaaattttgaatgattt-ctcattttcaatatcaataaaaatatatttctctatataaataattaaacaatcatttaacttgatatctcccac 7729810  T
Q  198 ttgatttcgcatccgattcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataa 297  Q
    | ||||| |||| | ||||||||||||||||||||| | ||||||  | ||||| |||||||||||| |||| | || | |||||||| |||| ||||||    
T  7729809 tcgattttgcattctattcttgataatattcatattatcaagaaatgaattgagctatatgatgataggtgtggcccaagagagaaataatttgtgataa 7729710  T
Q  298 gt 299  Q
    ||    
T  7729709 gt 7729708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 132 - 269
Target Start/End: Complemental strand, 31340017 - 31339880
Alignment:
Q  132 aatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcata 231  Q
    ||||||||| |||||||||||||| |||||| |||||||||||| |||||||  ||||| | |||    |||||||||  |||| |||||||||||||||    
T  31340017 aatatcaataaaaatatctttctcaatataattaactaaacaatcatttaactgatcatttctcacacaatttcgcatttgattattgataatattcata 31339918  T
Q  232 tttttaagaaagaatttgagatatatgatgatatgtgt 269  Q
    || |  ||||||||||||||||||||||||||||||||    
T  31339917 ttatcgagaaagaatttgagatatatgatgatatgtgt 31339880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 54393428 - 54393254
Alignment:
Q  54 tataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaata---tct 150  Q
    ||||||||||| ||||| ||| ||||||||| || |||| ||| |||||||||||||| |||||||||||||||||||||||||||| |||| |     |    
T  54393428 tataaaaatttgtagcattaaaaattgtcctctacgattattcatattatggaaactttgaatgattttctcattttcaatatcaataaaaaaaaacatt 54393329  T
Q  151 ttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataata 225  Q
    || |||||||||||||||||||||| ||||||||  ||||||   | ||||||||| |||| | |||| ||||||    
T  54393328 ttatctatataaataactaaacaattatttaaccggtcatctccgacttgatttcgtatccaaatcttaataata 54393254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 10480321 - 10480611
Alignment:
Q  13 gcagagacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcc-tattatggaaact 110  Q
    |||| ||||||| || ||||||||||||||||  |||| || |||||||||||  |  | ||||||||  | | |||||||||| | | ||||| |||||    
T  10480321 gcagtgacggattcatgatttttgaatagtggaggcaccatatataaaaatttgaaatagtaataattaacttctatgattttttcattttatgaaaact 10480420  T
Q  111 tagaatgatttt-ctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcat 209  Q
    | |||| ||||| | ||||||| |||||||| ||||  | |||||||||||||||||||||||||| |||||| |  |||| | ||| | |||||  |||    
T  10480421 ttgaattatttttcgcattttcgatatcaattaaaacctttttctctatataaataactaaacaatcatttaaacggtcatttctcagtcgatttgacat 10480520  T
Q  210 ccgattcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtg 300  Q
      ||||||||||||||| |||||| | ||||||| |||||| ||||||||| |||  |||| ||| | ||| ||||||| | |||||||||    
T  10480521 ttgattcttgataatatgcatattatcaagaaaggatttgaaatatatgatcatagatgtacgccaagagaaaaatgatatgtgataagtg 10480611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 52259831 - 52259689
Alignment:
Q  74 ataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaaca 173  Q
    ||||||||||| || ||| |||  |||| | ||||| | |||||||||||||||| ||||||||||| |||||| ||  ||| ||||||| ||| |||||    
T  52259831 ataattgtcctctacgatgttttatattctagaaacattgaatgattttctcattctcaatatcaataaaaatacctccctccatataaacaaccaaaca 52259732  T
Q  174 atgatttaaccaatcatctttcatttgatttcgcatccgattc 216  Q
    || ||||||||| ||||||  |||| |||||||||||||||||    
T  52259731 atcatttaaccagtcatctcccattcgatttcgcatccgattc 52259689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 44441594 - 44441699
Alignment:
Q  12 agcagagacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaact 110  Q
    ||||| |||||||||||||||||||||||||||  |||| || ||||||||||| ||| | ||||||||||||| || |||| ||| |||||| ||||||    
T  44441594 agcagtgacggatccaggatttttgaatagtggaggcactatatataaaaatttgtagtattaataattgtcctctacgattattcatattattgaaact 44441693  T
Q  111 tagaat 116  Q
    | ||||    
T  44441694 ttgaat 44441699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 49600729 - 49600847
Alignment:
Q  113 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccg 212  Q
    |||||||||||||||||||||| ||||| ||||| ||| | ||||||||| |||||| ||||| || |||||| | |||   |||| ||||||||| | |    
T  49600729 gaatgattttctcattttcaatctcaataaaaatctctctttctatataagtaactagacaatcatctaaccattaatcacccattcgatttcgcaactg 49600828  T
Q  213 attcttgataatattcata 231  Q
    | |||||||||| ||||||    
T  49600829 agtcttgataatcttcata 49600847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 34962274 - 34962377
Alignment:
Q  113 gaatgattttctcattttcaatatcaatgaaaa-tatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatcc 211  Q
    ||||||||||||| |||||||||||||| |||| |||||   |||||||||||||||||||||| |||||| || |||| || |||| |||||| ||||     
T  34962274 gaatgattttctcgttttcaatatcaataaaaagtatctcattctatataaataactaaacaatcatttaa-cagtcattttccattcgatttcacatct 34962372  T
Q  212 gattc 216  Q
    |||||    
T  34962373 gattc 34962377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 44441778 - 44441847
Alignment:
Q  246 tttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtgggggccatgtgatca 315  Q
    ||||||||||||||||||| ||||  ||| | ||||||||||||| ||||||||| |  |||||||||||    
T  44441778 tttgagatatatgatgataagtgtgcgccaagagagaaatgatttgtgataagtgtgatccatgtgatca 44441847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 44111249 - 44111310
Alignment:
Q  113 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaa 174  Q
    |||| ||||| |||||||| || ||||| ||||||||  ||||||||||| |||||||||||    
T  44111249 gaataattttttcattttcgatctcaataaaaatatcactctctatataagtaactaaacaa 44111310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 315
Target Start/End: Complemental strand, 28529223 - 28528962
Alignment:
Q  54 tataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttc 153  Q
    ||||||||| | ||||| |||||||||| || |  |||||||| |||||| |||||||  || |||||| ||||||||||||||||| ||||||| ||||    
T  28529223 tataaaaatctgtagcattaataattgttctctccgatttttcatattatagaaactttaaaagattttatcattttcaatatcaataaaaatatttttc 28529124  T
Q  154 tctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcatatttttaagaaagaatttgagat 253  Q
    ||| |||||||||||||||||| || ||||| ||||||| |||||  |||| |||||||||||||||||||| ||||||| | |||||||||||||||||    
T  28529123 tctgtataaataactaaacaatcatgtaaccgatcatctctcattcaattttgcatccgattcttgataataatcatattgtcaagaaagaatttgagat 28529024  T
Q  254 atatgatgatatgtgtaggccgaaagagaaatgatttatgataagtgggggccatgtgatca 315  Q
    |||||||||||||||| | || |||||||||| |||| ||||||||| || |||||||||||    
T  28529023 atatgatgatatgtgtggaccaaaagagaaattatttctgataagtgtggaccatgtgatca 28528962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 98 - 300
Target Start/End: Original strand, 44718840 - 44719040
Alignment:
Q  98 tattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcat 197  Q
    ||||||| ||||||  ||||||||||| ||||||||||||| |  || |||||||||||||||||||||||||||||| |||||||| || || ||||||    
T  44718840 tattatgaaaactttcaatgattttcttattttcaatatcagtagaagtatctttctctatataaataactaaacaatcatttaaccgattatttttcat 44718939  T
Q  198 ttgatttcgcatccgattcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataa 297  Q
    | |||||| ||||| | ||||||||| ||||||||| | ||||||||||||||||||| ||||||||  |||||||  ||||||||||||||||| ||||    
T  44718940 tcgatttcacatccaaatcttgataaaattcatattatcaagaaagaatttgagatatttgatgata--tgtaggcaaaaagagaaatgatttataataa 44719037  T
Q  298 gtg 300  Q
    |||    
T  44719038 gtg 44719040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 42531033 - 42530893
Alignment:
Q  142 aaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgata--------atattcatatt 233  Q
    ||||||| |||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||        |||||||||||    
T  42531033 aaaatatatttcactatataaataactaaacaatcatttaaccgatcatctctcatttgatttcgcatccgattcttgataatatgataatattcatatt 42530934  T
Q  234 tttaagaaagaatttgagatatatgatgatatgtgtaggcc 274  Q
     | |||||||  ||||||||||||||||||| |||| ||||    
T  42530933 atcaagaaagtttttgagatatatgatgataagtgtgggcc 42530893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 42071417 - 42071489
Alignment:
Q  98 tattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaa 170  Q
    |||||| |||||||  ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  42071417 tattatcgaaactttaaatgattttctcattttcaatatcaataaaaatatatttatctatataaataactaa 42071489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 21490384 - 21490265
Alignment:
Q  71 ataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaa 170  Q
    ||||||| |||  |||| |||||||| |||| | ||||| | |||||||||||||| ||||||||||||| |||||||   ||||||| ||| ||||       
T  21490384 ataataagtgttgtttacgatttttcatattcttgaaacattgaatgattttctcaatttcaatatcaataaaaatatacatctctatctaagtaac--g 21490287  T
Q  171 acaatgatttaaccaatcatct 192  Q
    ||||| ||||||||| ||||||    
T  21490286 acaatcatttaaccattcatct 21490265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 42071527 - 42071596
Alignment:
Q  246 tttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtgggggccatgtgatca 315  Q
    ||||||||||||||||||| |||| | || | ||||||||||||| ||||||||| ||  ||||||||||    
T  42071527 tttgagatatatgatgataggtgtggaccaagagagaaatgatttgtgataagtgtggatcatgtgatca 42071596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 7813624 - 7813549
Alignment:
Q  113 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcat 190  Q
    |||||||||||||||||| |||| |||  || ||||||  |||||||||| ||||||||||||  |||||||| ||||    
T  7813624 gaatgattttctcattttaaataccaacaaatatatct--ctctatataagtaactaaacaattgtttaaccattcat 7813549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 947492 - 947379
Alignment:
Q  118 attttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattct 217  Q
    |||||||||||||| || ||||| ||||||||  |||| |||||| ||| |||| ||| | |||| || ||||||| |||   ||||| ||||| |||||    
T  947492 attttctcattttcgatgtcaataaaaatatcactctcaatataagtaaataaataattaattaatcattcatcttccatgcaatttcacatccaattct 947393  T
Q  218 tgataatattcata 231  Q
    ||  ||||||||||    
T  947392 tgtaaatattcata 947379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 57 - 297
Target Start/End: Original strand, 6822518 - 6822758
Alignment:
Q  57 aaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctct 156  Q
    |||||||| ||||| ||||||||||||||||  ||||||| |||||||||||||| |||||||||  ||||||||||||||||| ||||| ||||||| |    
T  6822518 aaaaatttgtagcattaataattgtcctttacaatttttcatattatggaaactttgaatgatttgttcattttcaatatcaataaaaatttctttcttt 6822617  T
Q  157 atataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcatatttttaagaaagaatttgagatata 256  Q
    ||||||||||||||||||| |||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||| | | |||  |||||||||||||    
T  6822618 atataaataactaaacaattatttaaccgatcatctctcattcgatttcacatccgattcttgataatattcatattatcatgaataaatttgagatata 6822717  T
Q  257 tgatgatatgtgtaggccgaaagagaaatgatttatgataa 297  Q
    ||||||||  ||| || | | ||| ||||||||| ||||||    
T  6822718 tgatgatagatgtgggtcaagagaaaaatgatttgtgataa 6822758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 120 - 297
Target Start/End: Complemental strand, 18250933 - 18250755
Alignment:
Q  120 tttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttg 219  Q
    ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||| ||||| |   |||||| |||   ||||| ||||  ||||||||    
T  18250933 tttctcattttgaatattaataaaaatatttttctctatataaataactaaacaatcatttatctggtcatctctcacgcgattttgcatttgattcttg 18250834  T
Q  220 ataatattcatatttttaagaaagaatttgagatatatgatgat-atgtgtaggccgaaagagaaatgatttatgataa 297  Q
    |||||||||||||| | |||||||||||||| |||||||| ||| |||||| | || | |||||||| |||| ||||||    
T  18250833 ataatattcatattatcaagaaagaatttgaaatatatgacgataatgtgtggaccaagagagaaataatttgtgataa 18250755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 315
Target Start/End: Complemental strand, 11769903 - 11769788
Alignment:
Q  200 gatttcgcatccgattcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagt 299  Q
    |||||||||||||||||||||| ||||| ||||| | |||||| |||||||||||||||||||||| | |  ||| ||||||||||||||| ||| ||||    
T  11769903 gatttcgcatccgattcttgattatatttatattatcaagaaaaaatttgagatatatgatgatatatttgagccaaaagagaaatgatttgtgagaagt 11769804  T
Q  300 gggggccatgtgatca 315  Q
    | ||||||| ||||||    
T  11769803 gtgggccatatgatca 11769788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 33106920 - 33106823
Alignment:
Q  76 aattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 175  Q
    |||| ||||||| |||||||  ||||||| ||| || ||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  33106920 aattatcctttacgattttta-tattatgtaaattttgaatgattt-ctcattttcaatatcaataaaaatatatttctctatataaataactaaacaat 33106823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 6901697 - 6901536
Alignment:
Q  76 aattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctc------tatataaataacta 169  Q
    ||||||||| || || || || |||| ||||||  | |||||||||||||||||||||| ||||| ||||| ||| ||||      ||||||| ||||||    
T  6901697 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctctctctatatataagtaacta 6901598  T
Q  170 aacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcata 231  Q
     ||||| ||||||||| | ||| | |||| ||||||||| | || |||||||||| ||||||    
T  6901597 gacaatcatttaaccattgatcatccattcgatttcgcagctgagtcttgataatcttcata 6901536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 33106823 - 33106750
Alignment:
Q  227 tcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtg 300  Q
    ||||||| | |||||||||||||| ||||||||  ||||||||||||| | |||||||| |||| |||||||||    
T  33106823 tcatattatcaagaaagaatttgatatatatgactatatgtgtaggccaagagagaaataatttgtgataagtg 33106750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 15810660 - 15810948
Alignment:
Q  13 gcagagacggatccaggatttttgaatagtgggtgca-catttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactt 111  Q
    |||| |||||||| ||||||||| ||||||||  ||| ||| || |||||||| ||||| ||||||||||||| ||  ||||||| ||||| ||||||||    
T  15810660 gcagcgacggatctaggattttttaatagtggaggcatcatataaaaaaatttgtagcattaataattgtcctctacaatttttcatattacggaaactt 15810759  T
Q  112 agaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatcc 211  Q
     ||| | |||||| ||||| || |||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||| ||||||    
T  15810760 tgaacggttttcttattttgaaaatcaataaaaatatatttctctatataaataactaaacaatcatttaaccgatcatctctcattcgattttgcatcc 15810859  T
Q  212 gattcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtg 300  Q
     ||||||||||||||||||| | | || ||| |||||||||||||||||||||| ||| |||| ||||| |||| |||| |||||||||    
T  15810860 aattcttgataatattcatactatcaaaaaataatttgagatatatgatgatatatgtgggccaaaagaaaaataatttgtgataagtg 15810948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 15726816 - 15727100
Alignment:
Q  13 gcagagacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactt 111  Q
    |||| ||||||| ||| |||||| ||||||||| |||| || || |||||||| ||||| ||||||||||||| ||| ||||||| ||||||||||||||    
T  15726816 gcagcgacggattcagaattttttaatagtggg-gcaccatataaaaaaatttgtagcattaataattgtcctctataatttttcatattatggaaactt 15726914  T
Q  112 agaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatcc 211  Q
     ||||| |||||| ||||| || |||||| ||||||| ||||| |||||||||||||||||||| |||||||| ||||||| |||||  |||| |||||     
T  15726915 tgaatggttttcttattttgaaaatcaataaaaatatatttctttatataaataactaaacaatcatttaaccgatcatctctcattcaattttgcatca 15727014  T
Q  212 gattcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataa 297  Q
    |||||||||||||||||||| | | |||||| ||||||||||||||||| |||| ||| |||| ||| | |||| |||| ||||||    
T  15727015 gattcttgataatattcatactatcaagaaataatttgagatatatgattatatatgtgggccaaaatacaaataatttgtgataa 15727100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 290
Target Start/End: Original strand, 29368448 - 29368713
Alignment:
Q  26 caggatttttgaatagtgggtgca-catttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttct 124  Q
    |||||||||||| || |||| ||| ||| ||||||||||| ||||| ||||||||||||| ||  ||||||| |||||| ||||||| ||||| ||||||    
T  29368448 caggatttttgattattgggggcatcatatataaaaatttgtagcattaataattgtcctctagaatttttcatattattgaaactttgaatggttttct 29368547  T
Q  125 cattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataat 224  Q
    |||||||||||||||| ||| ||| ||||| |||||||||||   |||||| |||||||| |||||||  |||| ||||  | ||||| |||||||||||    
T  29368548 cattttcaatatcaataaaagtatatttctttatataaataatcgaacaatcatttaaccgatcatctcacattcgattatgtatccggttcttgataat 29368647  T
Q  225 attcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgattt 290  Q
    ||||||||| | || |||||||||||||||||||||||||| |||  ||| | |||||||||||||    
T  29368648 attcatattatcaataaagaatttgagatatatgatgatatatgtgagccaagagagaaatgattt 29368713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 127 - 300
Target Start/End: Original strand, 4930660 - 4930832
Alignment:
Q  127 ttttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatat 226  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||| ||| |||||||  |||||||| |||| || ||| ||||||||||||||||||||    
T  4930660 ttttcaatatcaataaaaatatatttctttatataaataactaaataatcatttaactgatcatcttccattcgacttcacatccgattcttgataatat 4930759  T
Q  227 tcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtg 300  Q
    ||||||| | || ||||||||||||||| ||| |||||||||| | || | | ||||||||||| ||| |||||    
T  4930760 tcatattatcaaaaaagaatttgagatacatg-tgatatgtgtggaccaagaaagaaatgatttgtgagaagtg 4930832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 22399557 - 22399404
Alignment:
Q  18 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 116  Q
    |||||||||||||||||||||||||||| |||| || ||||||||||| ||||| || |||||||||| ||  ||| ||| ||||||||||||||  |||    
T  22399557 gacggatccaggatttttgaatagtgggcgcactatatataaaaatttgtagcattagtaattgtcctatagaattattcatattatggaaactttaaat 22399458  T
Q  117 gattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaa 171  Q
    ||||||||||||||||||||||||  ||| |  |||||| |||||||||||||||    
T  22399457 gattttctcattttcaatatcaatagaaaaacatttctc-atataaataactaaa 22399404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 17229054 - 17229004
Alignment:
Q  117 gattttctcattttcaatatcaatgaaaatatctttctctatataaataac 167  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| ||||||||    
T  17229054 gattttctcattttcaaaatcaataaaaatatttttctctatgtaaataac 17229004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 38351726 - 38351768
Alignment:
Q  213 attcttgataatattcatatttttaagaaagaatttgagatat 255  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  38351726 attcttgataatattcatattatcaagaaagaatttgagatat 38351768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 17228975 - 17228914
Alignment:
Q  213 attcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggcc 274  Q
    |||||||| |||||||||||| | || |||||||||||| ||||||||||||| ||| ||||    
T  17228975 attcttgacaatattcatattatcaaaaaagaatttgagctatatgatgatatatgtgggcc 17228914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 27343218 - 27343174
Alignment:
Q  106 aaacttagaatgattttctcattttcaatatcaatgaaaatatct 150  Q
    |||||| |||||||||||||||||||||| ||||| |||||||||    
T  27343218 aaactttgaatgattttctcattttcaatgtcaataaaaatatct 27343174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 40909995 - 40910037
Alignment:
Q  98 tattatggaaacttagaatgattttctcattttcaatatcaat 140  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||    
T  40909995 tattatagaaactttgaatgatcttctcattttcaatatcaat 40910037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 40381594 - 40381802
Alignment:
Q  66 tagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaata 165  Q
    ||||| ||||||||||| | || |||||||  |||||| ||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  40381594 tagcattaataattgtcttctacgattttttatattatagaaactttgaaagattttctcattttcaatatcaataaaaatatatttctctatataaata 40381693  T
Q  166 actaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcatatttttaagaaagaatttgagatatatgatgatat 265  Q
    |||||||||| |||||||| ||||||| ||||| |||||| ||| ||||||||||||||||||||||| | || ||| ||||||||||||||||||||||    
T  40381694 actaaacaatcatttaaccgatcatctctcattcgatttcacatgcgattcttgataatattcatattatcaaaaaataatttgagatatatgatgatat 40381793  T
Q  266 gtgtaggcc 274  Q
    |||| ||||    
T  40381794 gtgtgggcc 40381802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 260
Target Start/End: Complemental strand, 42164204 - 42163974
Alignment:
Q  31 tttttgaatagtgggtgca-catttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattt 129  Q
    ||||||||||||||| | | ||| ||||||| ||| ||||| |||| ||| || | ||  ||||||  ||||||||||| || |||||||||||||||||    
T  42164204 tttttgaatagtgggggtatcatatataaaattttgtagcattaatgattatcatctacaattttttatattatggaaattttgaatgattttctcattt 42164105  T
Q  130 tcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattca 229  Q
    | ||||||||| |||||||| ||||||||||||||||||||||||| |||||||| || |||| ||||| ||||||  ||  ||||||||||||||||||    
T  42164104 ttaatatcaataaaaatatccttctctatataaataactaaacaatcatttaaccgattatctctcattcgatttcctatttgattcttgataatattca 42164005  T
Q  230 tatttttaagaaagaatttgagatatatgat 260  Q
    |||| | |||||| |||| ||||||||||||    
T  42164004 tattatcaagaaataattagagatatatgat 42163974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 3310494 - 3310775
Alignment:
Q  22 gatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgatt 120  Q
    ||||||| |||||||||| ||||| |||| || ||| ||||||| ||||| ||||||||||||| ||  ||||||| |||||||||||||| |  | ||     
T  3310494 gatccagaatttttgaatggtgggggcactatatatgaaaatttgtagcattaataattgtcctctactatttttcatattatggaaactttggtt-atc 3310592  T
Q  121 ttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttga 220  Q
    || ||||||||||||||| | ||||||| |||| ||||| |||||| |||||||  ||||||||   ||||| ||||| || ||| ||||||||||||||    
T  3310593 ttatcattttcaatatcattaaaaatatatttcactatacaaataattaaacaaacatttaaccggacatctctcattcgaattctcatccgattcttga 3310692  T
Q  221 taatattcatatttttaag-aaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtggg 302  Q
    ||||||||||| | | ||| ||| |||||||||||||||||||||   ||  ||| |||||||||| ||||  ||||||||||    
T  3310693 taatattcatactatgaagaaaaaaatttgagatatatgatgataaacgtgagccaaaagagaaataatttcggataagtggg 3310775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 54 - 269
Target Start/End: Complemental strand, 37728571 - 37728356
Alignment:
Q  54 tataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttc 153  Q
    ||||||||||| ||||| |||||||||| || ||||||||| | ||  ||||||| || |||| ||||||| ||||||||||||||| |||||||| |||    
T  37728571 tataaaaatttgtagcattaataattgttctctatgattttccgtaccatggaaaatttgaataattttctaattttcaatatcaataaaaatatcattc 37728472  T
Q  154 tctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcatatttttaagaaagaatttgagat 253  Q
    ||||||||||||||||||| || |||||||||  |||||  || | ||||| |||||  ||||||||| ||||||||||  | || |||  |||| | ||    
T  37728471 tctatataaataactaaacgatcatttaaccagccatctcacactcgattttgcatctaattcttgatcatattcatatcatcaaaaaatgatttaaaat 37728372  T
Q  254 atatgatgatatgtgt 269  Q
    ||||||||||| ||||    
T  37728371 atatgatgataggtgt 37728356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 310
Target Start/End: Complemental strand, 14539589 - 14539421
Alignment:
Q  142 aaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcatatttttaagaa 241  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||  ||||||  || | ||||||||||| |||| ||||||||||||||| | | |||||    
T  14539589 aaaatatttttttctatataaataactaaacaatcatttaaccggtcatctcccactcgatttcgcatctgatttttgataatattcatactatcaagaa 14539490  T
Q  242 agaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtgggggccatgt 310  Q
    || |||||||||||||||| ||| |||| |||| | ||||||||||||| || |||||| || ||||||    
T  14539489 aggatttgagatatatgattataggtgtgggccaagagagaaatgatttgtgttaagtgtggaccatgt 14539421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 1336109 - 1336201
Alignment:
Q  18 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaac 109  Q
    |||||||||||||||||||||||||||| |||| |  ||||||||||| ||||| || |||||||||| ||||||| ||| ||||||||||||    
T  1336109 gacggatccaggatttttgaatagtgggggcactacatataaaaatttgtagcattagtaattgtcctctatgattattcatattatggaaac 1336201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 2537200 - 2537272
Alignment:
Q  113 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaacca 185  Q
    ||||||||||||||||||||||| |||  ||||||||| ||||||||||| |||||||||||| |||||||||    
T  2537200 gaatgattttctcattttcaataccaacaaaaatatctctctctatataagtaactaaacaataatttaacca 2537272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 12585655 - 12585810
Alignment:
Q  76 aattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 175  Q
    ||||||||| || || || || |||| ||||||  | |||||||||||||||||||||| ||||| ||||| ||| ||||||||||| |||||| |||||    
T  12585655 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctctatataagtaactagacaat 12585754  T
Q  176 gatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcata 231  Q
     ||||||||| | |||   ||||  |||||||| | || |||||||||| ||||||    
T  12585755 catttaaccattgatcacccattcaatttcgcaactgagtcttgataatcttcata 12585810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 16340159 - 16340319
Alignment:
Q  18 gacggatccaggatttttgaatagtgggtgcacatttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatg 117  Q
    |||||||||| |||||||||| | |||  ||||  | | ||||| || ||||| ||||||| ||| | ||  ||| ||| ||||| |||||||  |||||    
T  16340159 gacggatccaagatttttgaacaatggaggcactataaaaaaaaattgtagcattaataatagtcttctacaattattcatattacggaaactgtgaatg 16340258  T
Q  118 attttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgattt 180  Q
    ||||||| ||||||||||||||| |||| |  | ||||| |||||||||||||||||| ||||    
T  16340259 attttcttattttcaatatcaataaaaaaa--tatctctgtataaataactaaacaatcattt 16340319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 1336280 - 1336349
Alignment:
Q  246 tttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtgggggccatgtgatca 315  Q
    ||||||||||||||||||| |||| |||| | ||||||||| ||| ||||||||| ||  ||||||||||    
T  1336280 tttgagatatatgatgataagtgtgggccaagagagaaatgttttgtgataagtgtggttcatgtgatca 1336349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 15356162 - 15356060
Alignment:
Q  118 attttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattct 217  Q
    ||||||||||| |||||| ||| |||| | | | ||||||||||| ||||||||||||  ||||| || ||||||  |||  ||||| ||||| ||||||    
T  15356162 attttctcattatcaataccaacgaaagtgtatctctctatataagtaactaaacaattgtttaatcattcatctcccatacgattttgcatctgattct 15356063  T
Q  218 tga 220  Q
    |||    
T  15356062 tga 15356060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 62 - 292
Target Start/End: Original strand, 30294091 - 30294321
Alignment:
Q  62 tttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatata 161  Q
    |||||| || ||||||||||| | ||  ||||||| |||||||||||||| ||||| |||||| ||||| || |||||| ||||||||||| | ||||||    
T  30294091 tttataacattaataattgtcttctacaatttttcatattatggaaactttgaatggttttcttattttgaaaatcaataaaaatatctttttttatata 30294190  T
Q  162 aataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcatatttttaagaaagaatttgagatatatgatg 261  Q
    ||||||||||||||  ||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||| | | |||||||||||| ||||||||||||    
T  30294191 aataactaaacaatcttttaaccgatcatctctcattcgatttcgcatcagattcttgataatattcatactatcaagaaagaatttaagatatatgatg 30294290  T
Q  262 atatgtgtaggccgaaagagaaatgatttat 292  Q
    ||||||||||  | |||||||||| ||||||    
T  30294291 atatgtgtagatcaaaagagaaataatttat 30294321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 27850394 - 27850678
Alignment:
Q  18 gacggatccaggatttttgaatagtgggtgca-catttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 116  Q
    |||||||||| |||||||||||| || | ||| ||| ||| ||||||| ||| | |||||||| |||| ||| ||||||| | |||||||||||| ||||    
T  27850394 gacggatccaagatttttgaataatgagggcatcatatatgaaaatttgtagtattaataattctcctctataatttttcattttatggaaactttgaat 27850493  T
Q  117 gattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattc 216  Q
    ||| || ||||||||||||| ||| ||||| |||||| ||||||||||||||||||||| |||||||  ||||| ||  ||| | ||| |||||| ||||    
T  27850494 gatattatcattttcaatattaataaaaatgtctttcactatataaataactaaacaatcatttaactgatcatattatattcgcttttgcatccaattc 27850593  T
Q  217 ttgataatattcatatttttaag-aaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtg 300  Q
    ||||||||||||||||| | ||| ||| ||||||| |||||| |||||| |||| |||| |||||||||| ||||||||||||||    
T  27850594 ttgataatattcatattatcaagaaaaaaatttgatatatataatgataagtgtgggccaaaagagaaataatttatgataagtg 27850678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 115 - 311
Target Start/End: Complemental strand, 21487530 - 21487333
Alignment:
Q  115 atgattttctcattttcaatatcaatg-------aaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgc 207  Q
    ||||||||||||||||||||||||||        ||||||| ||| ||||||||||||| |||||||| |||||||  ||||||| |||||||||||  |    
T  21487530 atgattttctcattttcaatatcaatatcaataaaaaatatttttatctatataaataattaaacaatcatttaactgatcatctctcatttgattttac 21487431  T
Q  208 atccgattcttgataatattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtgggggcca 307  Q
    ||| |||     |||||||||||||| | || |||||||||||||||| ||||||||||||| | || ||||||||||||||| ||| ||||| || |||    
T  21487430 atctgat-----ataatattcatattatcaaaaaagaatttgagatat-tgatgatatgtgtggaccaaaagagaaatgatttgtgagaagtgtggacca 21487337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 37244915 - 37245022
Alignment:
Q  85 ttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaacc 184  Q
    |||||||||||| | ||||| |||||| ||||||||||| ||||||| |||||||| |||||||  ||||| |||||||||| |||||||| |||||||     
T  37244915 ttatgatttttcattttatgaaaactttgaatgattttcacattttcgatatcaataaaaatattgttctcaatataaataattaaacaatcatttaacg 37245014  T
Q  185 aatcatct 192  Q
    ||||||||    
T  37245015 aatcatct 37245022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 46396725 - 46396620
Alignment:
Q  12 agcagagacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaact 110  Q
    ||||| |||||||||||||||||||||||||||| |||| || ||||||||||| ||||| ||||||||||||| || |||| ||| |||||| ||||||    
T  46396725 agcagtgacggatccaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgtcctctacgattattcatattattgaaact 46396626  T
Q  111 tagaat 116  Q
    | ||||    
T  46396625 ttgaat 46396620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 5200333 - 5200404
Alignment:
Q  156 tatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatatt 227  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||||||| |||  ||||||||||||||||    
T  5200333 tatataaataactaaacaattatttaatcaatcatctctcatttgatttcacatttgattcttgataatatt 5200404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 1282175 - 1282277
Alignment:
Q  18 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 116  Q
    |||||||||||||||||||||||||||| |||| || ||||||||| | ||||| ||||||||||| | ||  ||| ||| |||||||||||||| ||||    
T  1282175 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 1282274  T
Q  117 gat 119  Q
    |||    
T  1282275 gat 1282277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 1283206 - 1283308
Alignment:
Q  18 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 116  Q
    |||||||||||||||||||||||||||| |||| || ||||||||| | ||||| ||||||||||| | ||  ||| ||| |||||||||||||| ||||    
T  1283206 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 1283305  T
Q  117 gat 119  Q
    |||    
T  1283306 gat 1283308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 29095902 - 29095842
Alignment:
Q  113 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaaca 173  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||| ||| ||||||||||    
T  29095902 gaatgattttctcattttcaatctcaataaaaacatctttctctatgtaagtaactaaaca 29095842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 46396541 - 46396472
Alignment:
Q  246 tttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtgggggccatgtgatca 315  Q
    ||||||||||||||||||| |||| |||| | ||||||||||||| ||||||||| |  |||||||||||    
T  46396541 tttgagatatatgatgataagtgtgggccaagagagaaatgatttctgataagtgtgatccatgtgatca 46396472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 42773370 - 42773420
Alignment:
Q  240 aaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgattt 290  Q
    |||||||||||| |||||||||||||||||  ||| |||||||||||||||    
T  42773370 aaagaatttgagttatatgatgatatgtgtgtgccaaaagagaaatgattt 42773420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 42772340 - 42772377
Alignment:
Q  143 aaatatctttctctatataaataactaaacaatgattt 180  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  42772340 aaatatctttctctatataaataactaaacaatcattt 42772377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 37245038 - 37245114
Alignment:
Q  240 aaagaatttgagatatatgatgatatgtgtaggccgaa-agagaaatgatttatgataagtgggggccatgtgatca 315  Q
    |||| |||||||||||||||| |||| ||| || | || ||||||||||||||||||||||| ||  ||||||||||    
T  37245038 aaagtatttgagatatatgattatatatgtggggctaagagagaaatgatttatgataagtgtggatcatgtgatca 37245114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 42772392 - 42772459
Alignment:
Q  165 aactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcatat 232  Q
    ||||||||||| ||||||   ||||||| ||||| |||| ||  ||||||||||||||||||||||||    
T  42772392 aactaaacaatcatttaattgatcatctctcattcgattccgtgtccgattcttgataatattcatat 42772459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 1282281 - 1282354
Alignment:
Q  152 tctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataata 225  Q
    |||||||| ||||||||||||||| ||||||||| |||||    | |||||||||||||  |||||| ||||||    
T  1282281 tctctataaaaataactaaacaatcatttaaccagtcatcccctacttgatttcgcatctaattcttaataata 1282354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 1283312 - 1283385
Alignment:
Q  152 tctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataata 225  Q
    |||||||| ||||||||||||||| ||||||||| |||||    | |||||||||||||  |||||| ||||||    
T  1283312 tctctataaaaataactaaacaatcatttaaccagtcatcccctacttgatttcgcatctaattcttaataata 1283385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 31570581 - 31570500
Alignment:
Q  113 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatcttt 194  Q
    |||||||| | ||||||| |||| |||  ||||||| | |||||||||||||||||||| |||  |||||||| | ||||||    
T  31570581 gaatgattatttcatttttaataacaacaaaaatatttctctctatataaataactaaataattttttaaccatttatcttt 31570500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 27 - 308
Target Start/End: Complemental strand, 23756791 - 23756507
Alignment:
Q  27 aggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttat-gatttttcctattatggaaacttagaatgattttct 124  Q
    ||||| ||||||||||||| |||| || |||||||| || ||||| |||||||||||  | || |||||||  |||||||||||||| ||||||||||||    
T  23756791 aggatatttgaatagtgggggcaccatatataaaaagttgtagcattaataattgtctctaattgattttttatattatggaaactttgaatgattttct 23756692  T
Q  125 cattttcaa-tatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataa 223  Q
    ||||||||| ||||||| ||||||| ||| |||||||||| |||||||| || | ||||||| | ||||  || |  |||||||||| ||||||||||||    
T  23756691 cattttcaaatatcaataaaaatatatttttctatataaacaactaaacgatcacttaaccagtaatctcccactaaatttcgcatctgattcttgataa 23756592  T
Q  224 tattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtgggggccat 308  Q
    ||||| |||| | |||||||||||||||||||||||||||| |||   ||| ||||||||||||||| |  |||||| |||||||    
T  23756591 tattcgtattatcaagaaagaatttgagatatatgatgataggtgcgtgccaaaagagaaatgatttgtattaagtgtgggccat 23756507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 22973002 - 22972847
Alignment:
Q  76 aattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 175  Q
    ||||||||| || || || || |||| ||||||  | |||||||||||||||||||||| ||||| ||||| ||| ||| ||||||| |||||| |||||    
T  22973002 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctatatataagtaactagacaat 22972903  T
Q  176 gatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcata 231  Q
     ||||||||| | |||   |||| ||||||||| | || |||||||||| ||||||    
T  22972902 catttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcata 22972847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 33758512 - 33758395
Alignment:
Q  113 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccg 212  Q
    |||| ||||||||||||||||| ||||| |||||||| ||||| |||||| |||  ||||||| |||||| || | ||| |||||   ||||| ||||||    
T  33758512 gaataattttctcattttcaatgtcaataaaaatatcattctcaatataagtaatcaaacaattatttaatcatttatccttcatccaatttcacatccg 33758413  T
Q  213 attcttgataatattcat 230  Q
    ||||||||||||| ||||    
T  33758412 attcttgataatactcat 33758395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 33338348 - 33338293
Alignment:
Q  118 attttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 175  Q
    ||||||||||||||||||||||| ||||||  ||  ||||||||||||| ||||||||    
T  33338348 attttctcattttcaatatcaataaaaata--ttattctatataaataattaaacaat 33338293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 47552200 - 47551993
Alignment:
Q  21 ggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgat 119  Q
    ||||||| ||||||||||||||||| |||| || ||||||||||| || || || ||||| ||||||| |||| ||| |||||||||||||| |||||||    
T  47552200 ggatccatgatttttgaatagtgggagcactatatataaaaatttgtaacattagtaattatcctttacgattattcatattatggaaactttgaatgat 47552101  T
Q  120 tttctcattttcaatatcaatgaaa--atatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattct 217  Q
    ||||||||||||||||||||| |||  | |  ||||||| ||| |||||||||||||| |||||| || ||||||   | ||||||||| |||| ||| |    
T  47552100 tttctcattttcaatatcaataaaaagaaacttttctctgtatgaataactaaacaatcatttaatcagtcatctccgacttgatttcgtatccaatttt 47552001  T
Q  218 tgataata 225  Q
    | ||||||    
T  47552000 tcataata 47551993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 124 - 300
Target Start/End: Original strand, 13035532 - 13035704
Alignment:
Q  124 tcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataa 223  Q
    |||||||| |||||||| ||||||| |||||||||||||||||    ||||| ||||||||  ||||||  || | |||||  |||||||||||||||||    
T  13035532 tcattttcgatatcaataaaaatatttttctctatataaataa----acaattatttaaccggtcatctcccactcgatttgacatccgattcttgataa 13035627  T
Q  224 tattcatatttttaagaaagaatttgagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtg 300  Q
    |||||||||| | ||||||| |||| | ||||||||| ||| |||| |||| | ||| ||||||||| |||||||||    
T  13035628 tattcatattatcaagaaaggatttcatatatatgattataggtgtgggccaagagataaatgatttgtgataagtg 13035704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 311
Target Start/End: Complemental strand, 22087913 - 22087653
Alignment:
Q  54 tataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttc 153  Q
    ||||||||||| || ||||||||||| |||| ||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||| ||||||| |||     
T  22087913 tataaaaatttgtaacaataataattatcctctatgatttttcatattatgaaaactttgaatgattttcgcattttcaatatcaataaaaatat-ttta 22087815  T
Q  154 tctatataaataactaaacaatgatttaaccaatcatctttcatttgat-----ttcgcatccgattcttgataatattcatatttttaagaaagaattt 248  Q
    | || || | ||| |||||| | |||||||| || ||||  || |  ||     || |||| | ||||||||||||||||||||| | ||||||  | ||    
T  22087814 tataaat-attaattaaacagtcatttaaccgattatctcccactcaatatcgatttgcattctattcttgataatattcatattatcaagaaatgactt 22087716  T
Q  249 gagatatatgatgatatgtgtaggccgaaagagaaatgatttatgataagtgggggccatgtg 311  Q
    ||||||||| || ||| ||||  ||| ||||||||||||| | ||||||||| ||| ||||||    
T  22087715 gagatatataattataggtgtgagccaaaagagaaatgatatgtgataagtgtgggtcatgtg 22087653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 46732653 - 46732755
Alignment:
Q  113 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccg 212  Q
    ||||| |||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||| | ||||||| ||||||  |||||||||||||||| |    
T  46732653 gaatgtttttctcattttcaatatcaat-aaaatatctctttctatataaataattaaacaatcaattaaccagtcatctcccatttgatttcgcatctg 46732751  T
Q  213 attc 216  Q
    ||||    
T  46732752 attc 46732755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 220
Target Start/End: Original strand, 27907223 - 27907367
Alignment:
Q  74 ataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaaca 173  Q
    |||||||||||||| |||| | | |||| || |||  | |||||||||| |||||||||||| |||  |||||||||  |||||||||| ||||||||||    
T  27907223 ataattgtcctttacgattctccatattttgaaaatattgaatgattttttcattttcaataccaacaaaaatatct--ctctatataagtaactaaaca 27907320  T
Q  174 atgatttaaccaatcatctttcatttgatttcgcatccgattcttga 220  Q
    ||  |||||||| ||||||   ||  |||||||||||||||||||||    
T  27907321 attgtttaaccattcatctcctatgcgatttcgcatccgattcttga 27907367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 26333336 - 26333241
Alignment:
Q  22 gatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 116  Q
    |||||| |||||||||||||| || |||| || ||||||||||| ||||| ||||||||||||| || |||| ||| |||||||||||||| ||||    
T  26333336 gatccaagatttttgaatagtcggggcactatatataaaaatttgtagcattaataattgtcctctacgattattcatattatggaaactttgaat 26333241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 35747008 - 35747072
Alignment:
Q  200 gatttcgcatccgattcttgataatattcatatttttaagaaagaatttgagatatatgatgata 264  Q
    ||||| |||||| ||| ||||||||||||||||| | ||||||| ||||||||||||||||||||    
T  35747008 gattttgcatccaatttttgataatattcatattatcaagaaaggatttgagatatatgatgata 35747072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 13028605 - 13028815
Alignment:
Q  18 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 116  Q
    |||||||||| ||||||||||||||| |   || || |||||||| ||  |||| |||||||| |||| || | |||||  ||||||| ||| || ||||    
T  13028605 gacggatccaagatttttgaatagtgaggataccatatataaaaaatttaagcattaataattatcctctacgttttttaatattatgaaaattttgaat 13028704  T
Q  117 gattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattc 216  Q
     |||||||||||||| | || ||| || |||| | |||||||||| ||||    ||||| |||||||   ||||||  || | ||||||  |||||||||    
T  13028705 cattttctcattttcgaaattaataaatatatttatctctatatatataa----acaattatttaactggtcatctaccagtcgatttcatatccgattc 13028800  T
Q  217 ttgataatattcata 231  Q
    |||||||||||||||    
T  13028801 ttgataatattcata 13028815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 24368092 - 24368009
Alignment:
Q  114 aatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcat 197  Q
    ||||||||||||||||||||| ||||| ||||||||  |||| |||||| ||| |||| ||| | |||| || |||||||||||    
T  24368092 aatgattttctcattttcaatgtcaataaaaatatcactctcaatataagtaaataaataattaattaatcattcatctttcat 24368009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 6495814 - 6495746
Alignment:
Q  115 atgattttctcattttcaatatcaatgaaaatatctttctc--tatataaataactaaacaatgattta 181  Q
    |||||||||||||||| | | ||||| ||||||||| ||||  ||||||| |||||||||||| |||||    
T  6495814 atgattttctcatttttagtctcaataaaaatatctctctctatatataagtaactaaacaatcattta 6495746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 7855 - 7957
Alignment:
Q  18 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 116  Q
    |||||||||||||||||||||||||||| |||| || ||||||||| | ||||| ||||||||||| | ||  ||| ||| |||||||||||||| ||||    
T  7855 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 7954  T
Q  117 gat 119  Q
    |||    
T  7955 gat 7957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 7961 - 8034
Alignment:
Q  152 tctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataata 225  Q
    |||||||| ||||||||||||||| ||||||||| |||||    | |||||||||||||  |||||| ||||||    
T  7961 tctctataaaaataactaaacaatcatttaaccagtcatcccctacttgatttcgcatctaattcttaataata 8034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 8183 - 8285
Alignment:
Q  18 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 116  Q
    |||||||||||||||||||||||||||| |||| || ||||||||| | ||||| ||||||||||| | ||  ||| ||| |||||||||||||| ||||    
T  8183 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 8282  T
Q  117 gat 119  Q
    |||    
T  8283 gat 8285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 8289 - 8362
Alignment:
Q  152 tctctatataaataactaaacaatgatttaaccaatcatctttcatttgatttcgcatccgattcttgataata 225  Q
    |||||||| ||||||||||||||| ||||||||| |||||    | |||||||||||||  |||||| ||||||    
T  8289 tctctataaaaataactaaacaatcatttaaccagtcatcccctacttgatttcgcatctaattcttaataata 8362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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