View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_high_2 (Length: 712)
Name: NF9261_high_2
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 286 - 683
Target Start/End: Original strand, 52947969 - 52948368
Alignment:
| Q |
286 |
gtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtcagttgtatttcaccaagggggtgaatttgtta |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
52947969 |
gtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtcaattgtatttcaccatgggggtgaatttgtta |
52948068 |
T |
|
| Q |
386 |
gggactacattttgtattacactgggggtcaagaacacgtagt--taatgggattgatagggataggtggtgttactttgaagctactggtatactaaaa |
483 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
52948069 |
cggactatattttgtattacactgggggtcaagaacacgtagtagtaatgggattgatagggataggtggtgttacttcgaagcgactggtatactaaaa |
52948168 |
T |
|
| Q |
484 |
gagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattgaagatgataaatacaaaaggattgttgatgataatgacactgatgttg |
583 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52948169 |
gagttaggttatgatgatcaccttaagtatcatttatggtggtatgttattgaagatgataaatacaaaaggattgttgatgataatgacactgatattg |
52948268 |
T |
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| Q |
584 |
ttggtgactatgttgttgagaacaaacgtgtggctcatttatatgttgaacatttagctataggtatggtaggttcacatttggggcagagttctatgga |
683 |
Q |
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| T |
52948269 |
ttggtgattatgttattgagaacaaacgtgtggctcatttatatgttgaacattcagttatagggatggtaggttcacatgtggggtagagttctatgga |
52948368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 52947702 - 52947907
Alignment:
| Q |
20 |
atcacggcaacaaagtgtaatcgatggtcaacgaaggtttgtgaaggtgatcgacggtagaagaagcggtttttggcttgcgattgaggtagaacatttt |
119 |
Q |
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| T |
52947702 |
atcacggcaacgaagtgtaatcaacagttagcgaaggtttttgaaggtgatcgacggtagaagaagcggtttttggcttgcgattgaggtagaaca-ttc |
52947800 |
T |
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| Q |
120 |
tttcatatcctct--gnnnnnnnnncttgttatattttgtttgttgtttgaatcaaaaaatctttgaatgttagtttgtaatgatgtaaaagagtagaat |
217 |
Q |
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| | |||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
52947801 |
taacctatcctcttatttttttcttcttcttatcttttgtttgttgtttgaatcaaaaaatctttgaatgctagtttataatgatgtaaaagagtagaat |
52947900 |
T |
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| Q |
218 |
ggatgtc |
224 |
Q |
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||||||| |
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| T |
52947901 |
ggatgtc |
52947907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 436 - 579
Target Start/End: Original strand, 31810722 - 31810865
Alignment:
| Q |
436 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
535 |
Q |
| |
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||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
31810722 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
31810821 |
T |
|
| Q |
536 |
aagatgataaatacaaaaggattgttgatgataatgacactgat |
579 |
Q |
| |
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| T |
31810822 |
aggatgacaagtatgtaaggattatagatgacaatgacactgat |
31810865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 428 - 579
Target Start/End: Original strand, 7797472 - 7797623
Alignment:
| Q |
428 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggta |
527 |
Q |
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|||||| |||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| |||||| |
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| T |
7797472 |
ttaatgagattgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattttgatcaccttaagtataggttatggtggta |
7797571 |
T |
|
| Q |
528 |
tgttattgaagatgataaatacaaaaggattgttgatgataatgacactgat |
579 |
Q |
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| T |
7797572 |
tattattgaggatgacaagtatttaaggattatagatgacaatgacactgat |
7797623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 436 - 579
Target Start/End: Complemental strand, 30320491 - 30320348
Alignment:
| Q |
436 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
535 |
Q |
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||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
30320491 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
30320392 |
T |
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| Q |
536 |
aagatgataaatacaaaaggattgttgatgataatgacactgat |
579 |
Q |
| |
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| T |
30320391 |
aggatgacaagtatgtaaggattatagatgacaatgacactgat |
30320348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 428 - 579
Target Start/End: Original strand, 19393467 - 19393617
Alignment:
| Q |
428 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggta |
527 |
Q |
| |
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|||||| |||||||| ||| | |||||| ||||||||||||||| | ||| | ||||| ||||| |||||||||||||||||||| | |||| |||||| |
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| T |
19393467 |
ttaatgagattgataaggacaagtggtgctactttgaagctactaggatattgaaagatttaggatatgatgatcaccttaagta-aggttatggtggta |
19393565 |
T |
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| Q |
528 |
tgttattgaagatgataaatacaaaaggattgttgatgataatgacactgat |
579 |
Q |
| |
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| || |||| ||||| || || ||||||| | ||||| |||||||||||| |
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| T |
19393566 |
tattgttgaggatgacaattatgtaaggattatagatgacaatgacactgat |
19393617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 436 - 579
Target Start/End: Original strand, 22055067 - 22055210
Alignment:
| Q |
436 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
535 |
Q |
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||||||| ||| | ||| || ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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|
| T |
22055067 |
attgataaggacaagtgttgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
22055166 |
T |
|
| Q |
536 |
aagatgataaatacaaaaggattgttgatgataatgacactgat |
579 |
Q |
| |
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| ||||| || || ||||||| | ||||| |||||||||||| |
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| T |
22055167 |
aggatgacaagtatgtaaggattatagatgacaatgacactgat |
22055210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 446 - 577
Target Start/End: Complemental strand, 28430291 - 28430160
Alignment:
| Q |
446 |
ataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattgaagatgataa |
545 |
Q |
| |
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|||||||| | || |||||||| |||||||| |||| |||| || ||||||||||| ||||||||||| |||| ||||||| ||| ||| || || || |
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| T |
28430291 |
ataggtggagctattttgaagccactggtattttaaagcagtttggatatgatgatcatcttaagtatcgattatggtggtatattaatgaggaggacaa |
28430192 |
T |
|
| Q |
546 |
atacaaaaggattgttgatgataatgacactg |
577 |
Q |
| |
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|| |||||| ||||||| |||||||||| |
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|
| T |
28430191 |
gtatgttaggattattgatgacaatgacactg |
28430160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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