View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9261_high_20 (Length: 314)

Name: NF9261_high_20
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9261_high_20
NF9261_high_20
[»] chr2 (1 HSPs)
chr2 (1-298)||(3861319-3861616)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 3861319 - 3861616
Alignment:
Q  1 atgatacttttaagctatttaagttatttttgtccgaagcttctgagttttaccaaaatctaattgtaaaactgagaaaaaattctggagtgtcagaaga 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3861319 atgatacttttaagccatttaagttatttttgtccgaagcttctgagttttaccaaaatctaattgtaaaactgagaaaaaattctggagtgtcagaaga 3861418  T
Q  101 ggcattgttgaataaaaagggttggatctttacctctactgaaccagaaatcaagctgaaatgcaaatatttatgtcatcggtccttagtttgtatgggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3861419 ggcattgttgaataaaaagggttggatctttacctctactgaaccagaaatcaagctgaaatgcaaatatttatgtcatcggtccttagtttgtatgggc 3861518  T
Q  201 gatcttgccaggtataaagaacaatgtgaaaatccggatactcaaaatcataactggtcagttgctgccacacattacttggaagcaacaagaatttg 298  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3861519 gatcttgccaggtataaagaacaatgtgaaaatcctgatactcaaaatcataactggtcagttgctgccacacattacttggaagcaacaagaatttg 3861616  T

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