View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9261_low_10 (Length: 658)

Name: NF9261_low_10
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9261_low_10
NF9261_low_10
[»] chr4 (1 HSPs)
chr4 (18-647)||(45790778-45791414)


Alignment Details
Target: chr4 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 18 - 647
Target Start/End: Original strand, 45790778 - 45791414
Alignment:
Q  18 aatagtagttctttgttttgatgcaaaagtcagtttacttttcggtcaagaaatcaattttactttgaaattaacatgctggtgaaaattcctaaaaagt 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45790778 aatagtagttctttgttttgatgcaaaagttagtttacttttcggtcaagaaatcaattttactttgaaattaacatgctggtgaaaattcctaaaaagt 45790877  T
Q  118 tggaaacttcaacttgatttccaaagcattatatttaacacaatcaaacaaacttggttttgaatgcattacattgt-------aactgatatactctag 210  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  45790878 tggaaacttcaacttgatttccaatgcattatatttaacacaatcaaacaaacttggttttgaatgcattacattgtaagttgtaactgatatactctag 45790977  T
Q  211 aagttacagccaatgcattacattttctacctttgtttaagtccaaaatttccattatcctactttccatttactcaatcaagcaaatgcttgtacttta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45790978 aagttacagccaatgcattacattttctacctttgtttaagtccaaaatttccattatcctactttccatttactcaatcaagcaaatgcttgtacttta 45791077  T
Q  311 gtataaatgctatattgctatgaagtttgaagtttgtattatcagttgttgcttccctttattattttatacctgaagcttatatcaattttggttacca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45791078 gtataaatgctatattgctatgaagtttgaagtttgtattatcagttgttgcttccctttattattttatacctgaagcttatatcaattttggttacca 45791177  T
Q  411 tttgcagatgatacagaactgtttgatgttcccgcagtttctaatattaggcaggatttaactgagtggcaggaaaaacatgccaatcttgttctttcta 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45791178 tttgcagatgatacagaactgtttgatgttcccgcagtttctaatattaggcaggatttaactgagtggcaggaaaaacatgccaatcttgttctttcta 45791277  T
Q  511 ctgtcaaggttgcatctatttttaatttatttaagattccaaaggatttatttacacacataatcaaaacacagtgcgtcttgaggattaaatttccccc 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45791278 ctgtcaaggttgcatctatttttaatttatttaagattccaaaggatttatttacacacataatcaaaacacagtgcgtcttgaggattaaatttccccc 45791377  T
Q  611 actattaatacctgtatttgtgaatcagaataatcta 647  Q
    |||||||||||||||||||||||||||||||||||||    
T  45791378 actattaatacctgtatttgtgaatcagaataatcta 45791414  T

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