View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9261_low_11 (Length: 658)

Name: NF9261_low_11
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9261_low_11
NF9261_low_11
[»] chr4 (1 HSPs)
chr4 (18-647)||(45790778-45791414)


Alignment Details
Target: chr4 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 18 - 647
Target Start/End: Original strand, 45790778 - 45791414
Alignment:
Q  18 aatagtagttctttgttttgatgcaaaagtcagtttacttttcggtcaagaaatcaattttactttgaaattaacatgctggtgaaaattcctaaaaagt 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45790778 aatagtagttctttgttttgatgcaaaagttagtttacttttcggtcaagaaatcaattttactttgaaattaacatgctggtgaaaattcctaaaaagt 45790877  T
Q  118 tggaaacttcaacttgatttccaaagcattatatttaacacaatcaaacaaacttggttttgaatgcattacattgt-------aactgatatactctag 210  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  45790878 tggaaacttcaacttgatttccaatgcattatatttaacacaatcaaacaaacttggttttgaatgcattacattgtaagttgtaactgatatactctag 45790977  T
Q  211 aagttacagccaatgcattacattttctacctttgtttaagtccaaaatttccattatcctactttccatttactcaatcaagcaaatgcttgtacttta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45790978 aagttacagccaatgcattacattttctacctttgtttaagtccaaaatttccattatcctactttccatttactcaatcaagcaaatgcttgtacttta 45791077  T
Q  311 gtataaatgctatattgctatgaagtttgaagtttgtattatcagttgttgcttccctttattattttatacctgaagcttatatcaattttggttacca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45791078 gtataaatgctatattgctatgaagtttgaagtttgtattatcagttgttgcttccctttattattttatacctgaagcttatatcaattttggttacca 45791177  T
Q  411 tttgcagatgatacagaactgtttgatgttcccgcagtttctaatattaggcaggatttaactgagtggcaggaaaaacatgccaatcttgttctttcta 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45791178 tttgcagatgatacagaactgtttgatgttcccgcagtttctaatattaggcaggatttaactgagtggcaggaaaaacatgccaatcttgttctttcta 45791277  T
Q  511 ctgtcaaggttgcatctatttttaatttatttaagattccaaaggatttatttacacacataatcaaaacacagtgcgtcttgaggattaaatttccccc 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45791278 ctgtcaaggttgcatctatttttaatttatttaagattccaaaggatttatttacacacataatcaaaacacagtgcgtcttgaggattaaatttccccc 45791377  T
Q  611 actattaatacctgtatttgtgaatcagaataatcta 647  Q
    |||||||||||||||||||||||||||||||||||||    
T  45791378 actattaatacctgtatttgtgaatcagaataatcta 45791414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University