View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_13 (Length: 571)
Name: NF9261_low_13
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 209 - 554
Target Start/End: Complemental strand, 891975 - 891630
Alignment:
| Q |
209 |
taccgttggaagcattgagagaaggaatcctccatgagaaagaagaaaagaaggcatcaatatcagaatcaggaaaagtggctttgatgtatctttcaac |
308 |
Q |
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| T |
891975 |
taccgttggaagcattgagagaaggaatcctccatgagaaagaagaaaagaaggcatcaatatcagaatcaggaaaagtggctttgatgtatcgttcaac |
891876 |
T |
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| Q |
309 |
agagagcttgctagcaaagatatggcgatgtttgcgactggatccacctttctgagtactcaatcgggacggtgagtaaagatatcgatcttgaaagcat |
408 |
Q |
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| T |
891875 |
agagagcttgctagcaaagatatggcgatgtttgcgactggatccacctttctgagtactcaatcgggacggtgagtaaagataacgatcttgaaagcat |
891776 |
T |
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| Q |
409 |
ccattgttatgaagtcttttaccagttttccatccccagatgtcaccttgttgtggccaattctcaggagcatatggtaatccttcgcctgattcatctg |
508 |
Q |
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| T |
891775 |
ccattgttatgaagtcttttaccagttttccatccccagatgtcaccttgttgtggccaattctcaggagcatatggtaatccttcgcctgattcatctg |
891676 |
T |
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| Q |
509 |
gtggtactggatggagagtcatccctgtaaatgtatcgcctctctt |
554 |
Q |
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| T |
891675 |
gtggtactggatggagagtcatccctgtaaatgtatcgcctctctt |
891630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 892080 - 892004
Alignment:
| Q |
129 |
ctcgaaacagatataaatgaaaattatgcaatcaaatctac---------aaacattaattagctatctagtatcat |
196 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
892080 |
ctcgcaacagatataaatgaaaattatgcaatcaaatctacaaatctaagaaacattaattagctatctagtatcat |
892004 |
T |
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