View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_14 (Length: 569)
Name: NF9261_low_14
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 14 - 552
Target Start/End: Original strand, 44055568 - 44056106
Alignment:
| Q |
14 |
gtgttcatgagtaagccaagggtagcaccttcgcgaatcggcatttgataatagattgcaacagctagagttccaacaattttgccaatgcaagcaagaa |
113 |
Q |
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| T |
44055568 |
gtgttcatgagtaagccaagggtagcaccttcacgaatcggcattcgataatagattgcaacagctagagttccaacaattttgccaatgcaagcaagaa |
44055667 |
T |
|
| Q |
114 |
aaatgacaagaataagaataacccaggtaaaagaccctttaatgagtcctatattggtttttaacccactaatggcaaaaaagagaggtaacaaaagtcc |
213 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44055668 |
aaatgacaagaataagaataacccaagtaaaagaccctttaatgagtcctatattggtttttaacccactaatggcaaaaaagagaggtaacaaaagtcc |
44055767 |
T |
|
| Q |
214 |
tgaaacaaaatcctcaagcttttctaccagagaaacaccaagcggtccattcggaattgccaaaccgaacacaaaagctccgaaaacagaatgagttcca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44055768 |
tgaaacaaaatcctcaagcttttctaccagagaaacaccaagcggtccattcggaattgccaaaccgaacacaaaagctccgaaaacagaatgagttcca |
44055867 |
T |
|
| Q |
314 |
atagcatcagtgatgaaaccggagaccatgactccggctaatataagagatatataaaactcactgaaagattcaccctcaggtgttttccgaactatcc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44055868 |
atagcatcagtgatgaaaccggagaccatgactccggctaatataagagatatataaaactcactgaaagattcaccctcaggtgttttctgaactatcc |
44055967 |
T |
|
| Q |
414 |
atgaagctgcgggtctaacagcgtaaatacaaatggcgacaaacgctgcggcagacaatagaacccaaagggaagcgaaagaagttgcttggttctcagc |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44055968 |
atgaagctgcgggtctaacagcgtaaatacaaatggcgacaaacgctgcggcagacaatagaacccaaagggaagcgaaagaagttgcttggttctcagc |
44056067 |
T |
|
| Q |
514 |
cattgcaatggctaaagccaagagaatccaagcacacac |
552 |
Q |
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| T |
44056068 |
cattgcaatggctaaagccaagagaatccaagcacacac |
44056106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 333
Target Start/End: Original strand, 39237605 - 39237759
Alignment:
| Q |
179 |
ccactaatggcaaaaaagagaggtaacaaaagtcctgaaacaaaatcctcaagcttttctaccagagaaacaccaagcggtccattcggaattgccaaac |
278 |
Q |
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|||||||| |||||||||||||| | ||||||||| |||||||| |||||||||||||| | |||| || |||||| |||||| | ||||| ||||| |
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| T |
39237605 |
ccactaattgcaaaaaagagaggaagcaaaagtccagaaacaaagtcctcaagcttttcaataagagcaaaaccaagtggtccagttggaataatcaaac |
39237704 |
T |
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| Q |
279 |
cgaacacaaaagctccgaaaacagaatgagttccaatagcatcagtgatgaaacc |
333 |
Q |
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| T |
39237705 |
caaacacaaaagctccaaaaacagaatgagttccaatagcatctgtgatgaaacc |
39237759 |
T |
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