View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_16 (Length: 561)
Name: NF9261_low_16
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_16 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 17 - 552
Target Start/End: Complemental strand, 40665558 - 40665021
Alignment:
| Q |
17 |
tcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaaatacgctgtaaatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40665558 |
tcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaaataggctgtaaatt |
40665459 |
T |
|
| Q |
117 |
acatacattaaaaaagttaagacttgtgcaaa--gattaacatatacatataacatattcaaaatgtaaaattataatgcctctaagacactaaagttta |
214 |
Q |
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| T |
40665458 |
atatacattaaaaaagttaagacttgtgcaaaaagattaacatatacatataacatattcaaaatgtaaaattataatgcctctaagaaactaaagttta |
40665359 |
T |
|
| Q |
215 |
aagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40665358 |
aagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagaccttcaattgtatcat |
40665259 |
T |
|
| Q |
315 |
caataggcagaatgtgcacacgtttaccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665258 |
caataggcagaatgtgcacacgtttaccatacttgacatcagtacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaac |
40665159 |
T |
|
| Q |
415 |
tttgttcatcctaatcctaggctcttcacagctatcatcagcaagagcaatacaaacagtatccttccttttctttccctgcaacacaacataaaccaca |
514 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665158 |
tttgttcatcctaatcctaggctcttcacaggtatcatcaccaagagcaatacaaacactatccttccttttctttccctgcaacacaacataaaccaca |
40665059 |
T |
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| Q |
515 |
ttaacaaatannnnnnnaacattgaaattaagtattat |
552 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |
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| T |
40665058 |
ttaacaaatatttttttaacattgaaattaagtattat |
40665021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 222 - 524
Target Start/End: Original strand, 40725193 - 40725495
Alignment:
| Q |
222 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40725193 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg |
40725292 |
T |
|
| Q |
322 |
cagaatgtgcacacgtttaccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttc |
421 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40725293 |
cagaatgtgcacacgtttaccatacttgacatcagtacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttc |
40725392 |
T |
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| Q |
422 |
atcctaatcctaggctcttcacagctatcatcagcaagagcaatacaaacagtatccttccttttctttccctgcaacacaacataaaccacattaacaa |
521 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40725393 |
atcctaatcctaggctcttcacaggtatcatcaccaagagcaatacaaacactatccttccttttctttccctgcaacacaacataaaccacattaacaa |
40725492 |
T |
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| Q |
522 |
ata |
524 |
Q |
| |
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||| |
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| T |
40725493 |
ata |
40725495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 40724500 - 40724641
Alignment:
| Q |
21 |
tgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaaatacgctgtaaattacat |
120 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||||| ||||||||||| || |
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| T |
40724500 |
tgaccttaaattctacacttctcatccctccccgcacaagaaatagatctccttttctgaccggacaataagcctccaagaaataggctgtaaattagat |
40724599 |
T |
|
| Q |
121 |
acattaaaaaagttaagacttgtgcaaagattaacatatacat |
163 |
Q |
| |
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|||| ||||||||| ||||||||||| ||| || |||||||| |
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| T |
40724600 |
acatcaaaaaagtt-agacttgtgcagagacaaaaatatacat |
40724641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 257 - 494
Target Start/End: Complemental strand, 109551 - 109314
Alignment:
| Q |
257 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
356 |
Q |
| |
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||||||||||| ||| |||||||||||||||| ||||| | |||||||| |||||||| | || |||||||| || | || ||||| |||||||||| |
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| T |
109551 |
aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatcgacgggaagaatgtgaactctctttccatatttgacatcag |
109452 |
T |
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| Q |
357 |
gacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctcttcacagctatcatcagc |
456 |
Q |
| |
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||| |||||||| || |||||||||||||||| ||| | | ||| ||||||||| |||||||| || || | ||||||||||| | |||||||| |
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| T |
109451 |
cacattgatgcaccgaaacaacatctccaagcctaaccctaagattgttcctcacaaccttgttcattcttatttttggctcttcacatgtttcatcagc |
109352 |
T |
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| Q |
457 |
aagagcaatacaaacagtatccttccttttctttccct |
494 |
Q |
| |
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| T |
109351 |
gagtgcaatacatatagtatctttccttttcttaccct |
109314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 257 - 494
Target Start/End: Original strand, 41093745 - 41093982
Alignment:
| Q |
257 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
356 |
Q |
| |
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||||||||||| ||| |||||||||||||||| ||||| | |||||||| |||||||| | || |||||||| || | || ||||| |||||||||| |
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| T |
41093745 |
aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatcgacgggaagaatgtgaactctctttccatatttgacatcag |
41093844 |
T |
|
| Q |
357 |
gacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctcttcacagctatcatcagc |
456 |
Q |
| |
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||| |||||||| || |||||||||||||||| ||| | | ||| ||||||||| |||||||| || || | ||||||||||| | |||||||| |
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| T |
41093845 |
cacattgatgcaccgaaacaacatctccaagcctaaccctaagattgttcctcacaaccttgttcattcttatttttggctcttcacatgtttcatcagc |
41093944 |
T |
|
| Q |
457 |
aagagcaatacaaacagtatccttccttttctttccct |
494 |
Q |
| |
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|| |||||||| | |||||| ||||||||||| |||| |
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| T |
41093945 |
gagtgcaatacatatagtatctttccttttcttaccct |
41093982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 257 - 494
Target Start/End: Complemental strand, 27976174 - 27975937
Alignment:
| Q |
257 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
356 |
Q |
| |
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|||||||| || ||| | |||||||| ||||| ||||| | |||||||| |||||||||| ||| ||||| || || || || ||||| |||||||||| |
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| T |
27976174 |
aactcacgctttaagtaagcatcaaatagattcccagtaaccccttcaatagtatcatcaacaggaagaatatgaactcgctttccatatttgacatcag |
27976075 |
T |
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| Q |
357 |
gacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctcttcacagctatcatcagc |
456 |
Q |
| |
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|||| ||||| ||||| |||||||| ||||||| ||| | | ||| |||||||| || ||||| || ||| | ||||||||||| | |||||||| |
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| T |
27976074 |
gacattgatgaacagaaacaacatcaccaagcctaaccctaagattgtttctcacaaccttattcattcttatctttggctcttcacatgtttcatcagc |
27975975 |
T |
|
| Q |
457 |
aagagcaatacaaacagtatccttccttttctttccct |
494 |
Q |
| |
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||| |||||||||| |||||||| |||||||| |||| |
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| T |
27975974 |
aagtgcaatacaaatcgtatcctttcttttcttaccct |
27975937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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