View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_17 (Length: 559)
Name: NF9261_low_17
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 225 - 544
Target Start/End: Complemental strand, 47088428 - 47088110
Alignment:
| Q |
225 |
atctggccagctaatgcaataatttacactcattctttgtcttagacagttagctgcccgtaatgtggaatactagaaaataacgtataacatgtttgtt |
324 |
Q |
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| T |
47088428 |
atctggccagctaatgcaataatttacactcattctttgtcttagacagttagctgcccgtaatgtggaatgctagaaaataacttataacatgtttgtt |
47088329 |
T |
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| Q |
325 |
ttattgttttgaaaacaaatgtgctacannnnnnnnnnnngaatccgagcctctgatacttttctgtcattggagctttggagtttgtctggttaggatt |
424 |
Q |
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| T |
47088328 |
ttattgttttgaaaacaaatgtgctacattttttttttt-gaatccgagcctctgttacttttctgtcattggagctttggagtttgtctggttaggatt |
47088230 |
T |
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| Q |
425 |
ctctctctctaacacagacgtgtctacccacctacacacacaacatagctcagcagttgtgtagtgaatgtgattttagcacataactaatgcttccttt |
524 |
Q |
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| T |
47088229 |
ctctctctctaacacagacgtgtctacccacctacacacacaacatagctcagcagttgtgtagtgaatgtgattttagcacataactaatgcttccttt |
47088130 |
T |
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| Q |
525 |
aagtgtgaggttaatctctg |
544 |
Q |
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| T |
47088129 |
aagtgtgaggttaatctctg |
47088110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 47088665 - 47088458
Alignment:
| Q |
19 |
gtgtttaattgtttatttgactatacaacataacatacatgtctctcgtgtctttattaagaggttcagctattggagaaatatgtgaagaaatttgaaa |
118 |
Q |
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| T |
47088665 |
gtgtttaattgtttatttgactatacaacataacatacatgtctctcgtgtctttattaagaggttcagctattggaga----tgtgaagaaatttgaaa |
47088570 |
T |
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| Q |
119 |
tgcaatacatgatctatatttcatgtcattacatactattgtatcttggtaatgtaattttatagcgtgaacttaagtagcttctgcttgtgatgttaaa |
218 |
Q |
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| T |
47088569 |
tgcaatacatgatctatatttcatgtcattacatactattgtatcttggtaatgtaattttatagtgtgaacttaagtagcttctgcttgtgatgttaaa |
47088470 |
T |
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| Q |
219 |
caaaacatctgg |
230 |
Q |
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| T |
47088469 |
caaaacatctgg |
47088458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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