View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9261_low_18 (Length: 537)

Name: NF9261_low_18
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9261_low_18
NF9261_low_18
[»] scaffold0144 (3 HSPs)
scaffold0144 (296-482)||(35812-35998)
scaffold0144 (48-301)||(35486-35739)
scaffold0144 (477-536)||(35481-35540)
[»] chr6 (17 HSPs)
chr6 (325-482)||(16656363-16656520)
chr6 (296-482)||(16795485-16795671)
chr6 (296-482)||(16869644-16869830)
chr6 (348-482)||(17067868-17068002)
chr6 (348-482)||(16985822-16985956)
chr6 (197-268)||(16870011-16870082)
chr6 (348-482)||(16786330-16786464)
chr6 (361-482)||(16779552-16779673)
chr6 (154-268)||(16795190-16795304)
chr6 (196-268)||(16779198-16779270)
chr6 (196-243)||(16985472-16985519)
chr6 (197-240)||(16656085-16656128)
chr6 (477-536)||(16785141-16785200)
chr6 (196-243)||(17067515-17067562)
chr6 (197-236)||(17096945-17096984)
chr6 (480-524)||(16779057-16779101)
chr6 (265-301)||(16795376-16795412)
[»] scaffold0133 (8 HSPs)
scaffold0133 (362-482)||(6856-6976)
scaffold0133 (196-268)||(16093-16165)
scaffold0133 (197-268)||(6523-6594)
scaffold0133 (348-482)||(11217-11351)
scaffold0133 (482-524)||(10741-10783)
scaffold0133 (475-524)||(6381-6430)
scaffold0133 (483-524)||(15952-15993)
scaffold0133 (197-233)||(10883-10919)
[»] chr3 (7 HSPs)
chr3 (362-482)||(38941018-38941138)
chr3 (348-482)||(7054931-7055065)
chr3 (196-268)||(38943182-38943254)
chr3 (197-268)||(38941421-38941492)
chr3 (480-524)||(7055512-7055556)
chr3 (484-535)||(38943019-38943070)
chr3 (196-242)||(7055369-7055415)
[»] scaffold0256 (2 HSPs)
scaffold0256 (348-482)||(7522-7656)
scaffold0256 (475-524)||(7040-7089)
[»] chr8 (2 HSPs)
chr8 (348-442)||(13376454-13376548)
chr8 (477-525)||(13375962-13376010)


Alignment Details
Target: scaffold0144 (Bit Score: 163; Significance: 8e-87; HSPs: 3)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 296 - 482
Target Start/End: Original strand, 35812 - 35998
Alignment:
Q  296 ggtaattccacgagtctagaaaatttgcgtatggaaagtgacttaagattactgttgttaacaatggacttcaataactcttcatttcctcctttagcag 395  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35812 ggtaattccatgagtctagaaaatttgcgtatggaaagtgacttaagattactgttgttaacaatggacttcaataactcttaatttcctcctttagcag 35911  T
Q  396 aaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttcttatatcaaactctaaaagttgtggtagcatctcta 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||||||||||||||||||    
T  35912 aaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttgttatatctaaatttaaaagttgtggtagcatctcta 35998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 48 - 301
Target Start/End: Original strand, 35486 - 35739
Alignment:
Q  48 ttaaattttgtagtgaagtcattgcacccaaactctcctgtaacgatgttagagaaagtaattcgttcagatacaaagcttgcattgcggggatgtatta 147  Q
    |||||||||| || |||||||| ||||||||||  ||  | || ||| |||||||||| || |  ||||||||||||| ||||| || |||||||| ||     
T  35486 ttaaattttgaagagaagtcatggcacccaaacagtctggaaaggatcttagagaaaggaaatgattcagatacaaagattgcagtgaggggatgtcttc 35585  T
Q  148 taacctttctagtattttttcatcacctctggagacaatcagatcaccaagggaagttagattggtcatgttatgtggaaaaacaaactgtggacaatca 247  Q
    ||| ||||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||  |     
T  35586 taagctttctagtattttttcatcaccccttgagacaatcagttcacaaagggaagttagattggtcatgttatgtggaaaaacaaactgtggacagcct 35685  T
Q  248 tggatataaagtgtcttaagagaactcaaactttgcaacaactgctctggtaat 301  Q
       ||||  |||||||||||||||||||||| ||||||||||||||||| ||||    
T  35686 ccaatatttagtgtcttaagagaactcaaaccttgcaacaactgctctgataat 35739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 477 - 536
Target Start/End: Complemental strand, 35540 - 35481
Alignment:
Q  477 tctctaacatcctttccggactgtttgggtgcaatgacttctcttcaaaatttacaaatt 536  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  35540 tctctaagatcctttccagactgtttgggtgccatgacttctcttcaaaatttaaaaatt 35481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 325 - 482
Target Start/End: Original strand, 16656363 - 16656520
Alignment:
Q  325 tatggaaagtgacttaagattactgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaaggggtggc 424  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  16656363 tatggaaagtgacttaagattactgttgttaacaatagacttcaataactcttcatttcctcctttagcaaaaagtgatttaacagatgcaaggggtggc 16656462  T
Q  425 aatgtaagtttggggacatttcttatatcaaactctaaaagttgtggtagcatctcta 482  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||    
T  16656463 aatgtaagtttggggacatttcttatatctaaatttaaaagttgtggtagcatctcta 16656520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 296 - 482
Target Start/End: Original strand, 16795485 - 16795671
Alignment:
Q  296 ggtaattccacgagtctagaaaatttgcgtatggaaagtgacttaagattactgttgttaacaatggacttcaataactcttcatttcctcctttagcag 395  Q
    |||||||||  |||||| | ||||||   |||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||     
T  16795485 ggtaattccttgagtctggcaaattttaatatgtaaagtgatttaagattactgttgttaacaatagacttcaataactcttcatttcctccttcagcac 16795584  T
Q  396 aaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttcttatatcaaactctaaaagttgtggtagcatctcta 482  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  16795585 aaagtgatttaacagatggaaggggtggcaatgtaagtttgggaacatttcttatatctaactctaaaagttgtggtagcatctcta 16795671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 296 - 482
Target Start/End: Complemental strand, 16869830 - 16869644
Alignment:
Q  296 ggtaattccacgagtctagaaaatttgcgtatggaaagtgacttaagattactgttgttaacaatggacttcaataactcttcatttcctcctttagcag 395  Q
    |||||||||| |||||| | |||||||  ||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||     
T  16869830 ggtaattccatgagtctggcaaatttggatatgtgaagtgacttaagattactgttgtcaacaatggacttcaataactcttcattgcctccttcagcat 16869731  T
Q  396 aaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttcttatatcaaactctaaaagttgtggtagcatctcta 482  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||    
T  16869730 aaaatgatttaacagatggaaggggtggcaatgtaagtttggggacatttcttatatgtaactttaaaagttgtggtagcatctcta 16869644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 348 - 482
Target Start/End: Original strand, 17067868 - 17068002
Alignment:
Q  348 tgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttct 447  Q
    |||||| || ||||||||||| |||||||||||||||||||| | || ||||||| |  |||||||||| ||||||||||||||||||||||||||||||    
T  17067868 tgttgtaaataatggacttcattaactcttcatttcctccttgaacaaaaagtgactcgacagatggaatgggtggcaatgtaagtttggggacatttct 17067967  T
Q  448 tatatcaaactctaaaagttgtggtagcatctcta 482  Q
    |||||  |||| ||||||||||| |||||||||||    
T  17067968 tatatttaactttaaaagttgtgttagcatctcta 17068002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 482
Target Start/End: Original strand, 16985822 - 16985956
Alignment:
Q  348 tgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttct 447  Q
    |||||| | ||||| |||| ||||| |||||||||||||||| | | |||||||| | |||||||||||||| ||| ||||||| ||| | | | ||| |    
T  16985822 tgttgtaaccaatgaacttaaataagtcttcatttcctccttgaaccgaaagtgactcaacagatggaagggatggaaatgtaaatttagaggcttttgt 16985921  T
Q  448 tatatcaaactctaaaagttgtggtagcatctcta 482  Q
    |||||| |||||||||||||||| |||||||||||    
T  16985922 tatatctaactctaaaagttgtgttagcatctcta 16985956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 16870082 - 16870011
Alignment:
Q  197 agggaagttagattggtcatgttatgtggaaaaacaaactgtggacaatcatggatataaagtgtcttaaga 268  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||   |||||||||||||||||||    
T  16870082 agggaagttagattgttcatgttatgtggaaaaacaaactgtggacagtcgctgatataaagtgtcttaaga 16870011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 348 - 482
Target Start/End: Original strand, 16786330 - 16786464
Alignment:
Q  348 tgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttct 447  Q
    |||||| || |||||||||||||||||||||||||| |||  |||||| |||||| | |||| |||||||||  | || |||||| |||||||||||| |    
T  16786330 tgttgtaaaaaatggacttcaataactcttcatttcttccactagcagtaagtgactcaacatatggaagggacgacagtgtaagcttggggacatttat 16786429  T
Q  448 tatatcaaactctaaaagttgtggtagcatctcta 482  Q
    |||||  ||||  ||| ||||||| ||||||||||    
T  16786430 tatatttaacttcaaaggttgtggcagcatctcta 16786464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 482
Target Start/End: Original strand, 16779552 - 16779673
Alignment:
Q  361 ggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttcttatatcaaactct 460  Q
    |||||||||||| ||||||||||||||  || |||||||||| |  |||||||||||||   |||||| |||||| ||||||| | ||||||  ||||      
T  16779552 ggacttcaataattcttcatttcctccactaacagaaagtgactccacagatggaagggactgcaatgcaagtttagggacatctgttatatgtaacttc 16779651  T
Q  461 aaaagttgtggtagcatctcta 482  Q
    |||||||| |||||||||||||    
T  16779652 aaaagttggggtagcatctcta 16779673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 154 - 268
Target Start/End: Original strand, 16795190 - 16795304
Alignment:
Q  154 ttctagtattttttcatcacctctggagacaatcagatcaccaagggaagttagattggtcatgttatgtggaaaaacaaactgtggacaatcatggata 253  Q
    ||||| ||||||||||||||| | | |||||  |||| | |  || |||||||||| | ||||||||||||||||||||||||||||||| |    ||||    
T  16795190 ttctaatattttttcatcacccccgtagacatgcagaacccatagagaagttagatcgttcatgttatgtggaaaaacaaactgtggacagttgatgata 16795289  T
Q  254 taaagtgtcttaaga 268  Q
    | |||||||||||||    
T  16795290 ttaagtgtcttaaga 16795304  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 16779198 - 16779270
Alignment:
Q  196 aagggaagttagattggtcatgttatgtggaaaaacaaactgtggacaatcatggatataaagtgtcttaaga 268  Q
    ||||||||||||| || ||||||||||||||||||| |||||| |||| | | |||||| |||||||| ||||    
T  16779198 aagggaagttagactgttcatgttatgtggaaaaactaactgtagacagtaacggatatgaagtgtctcaaga 16779270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 16985472 - 16985519
Alignment:
Q  196 aagggaagttagattggtcatgttatgtggaaaaacaaactgtggaca 243  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||    
T  16985472 aagggaagttagactgttcatgttatgtggaaaaacaaattgtggaca 16985519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 16656085 - 16656128
Alignment:
Q  197 agggaagttagattggtcatgttatgtggaaaaacaaactgtgg 240  Q
    |||||||||||| || ||||||||||||||||||| ||||||||    
T  16656085 agggaagttagactgttcatgttatgtggaaaaactaactgtgg 16656128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 536
Target Start/End: Complemental strand, 16785200 - 16785141
Alignment:
Q  477 tctctaacatcctttccggactgtttgggtgcaatgacttctcttcaaaatttacaaatt 536  Q
    |||||||||||||| || |||||||||||||| ||||||||| | ||| | |||||||||    
T  16785200 tctctaacatccttgccagactgtttgggtgccatgacttctgtacaagaattacaaatt 16785141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 17067515 - 17067562
Alignment:
Q  196 aagggaagttagattggtcatgttatgtggaaaaacaaactgtggaca 243  Q
    ||||||||||||| || ||||||||||||||||||| || ||||||||    
T  17067515 aagggaagttagactgttcatgttatgtggaaaaacgaattgtggaca 17067562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 17096945 - 17096984
Alignment:
Q  197 agggaagttagattggtcatgttatgtggaaaaacaaact 236  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  17096945 agggaagttagactgttcatgttatgtggaaaaacaaact 17096984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 480 - 524
Target Start/End: Complemental strand, 16779101 - 16779057
Alignment:
Q  480 ctaacatcctttccggactgtttgggtgcaatgacttctcttcaa 524  Q
    |||||||| || || |||||||||||||| |||||||||||||||    
T  16779101 ctaacatcattgccagactgtttgggtgccatgacttctcttcaa 16779057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 16795376 - 16795412
Alignment:
Q  265 aagagaactcaaactttgcaacaactgctctggtaat 301  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  16795376 aagagaactcaaaccttgcaacaactgctctgttaat 16795412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 362 - 482
Target Start/End: Original strand, 6856 - 6976
Alignment:
Q  362 gacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttcttatatcaaactcta 461  Q
    ||||||||||| ||||||||||||||  ||||||||||||| | ||||||| |||||| || |||||||||||||||||||||| ||||||| || | ||    
T  6856 gacttcaataattcttcatttcctccactagcagaaagtgactcaacagatagaagggatgtcaatgtaagtttggggacatttgttatatctaaattta 6955  T
Q  462 aaagttgtggtagcatctcta 482  Q
    |||||||||||||||||||||    
T  6956 aaagttgtggtagcatctcta 6976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 16093 - 16165
Alignment:
Q  196 aagggaagttagattggtcatgttatgtggaaaaacaaactgtggacaatcatggatataaagtgtcttaaga 268  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||| | |  ||||| |||||||| ||||    
T  16093 aagggaagttagactgttcatgttatgtggaaaaacaaactgtggacagtaactgatatgaagtgtctcaaga 16165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 6523 - 6594
Alignment:
Q  197 agggaagttagattggtcatgttatgtggaaaaacaaactgtggacaatcatggatataaagtgtcttaaga 268  Q
    ||||||| |||| || ||||||||||||||||||| ||||||||||||| || ||||| |||||||| ||||    
T  6523 agggaagctagactgttcatgttatgtggaaaaactaactgtggacaataatagatatgaagtgtctcaaga 6594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 348 - 482
Target Start/End: Original strand, 11217 - 11351
Alignment:
Q  348 tgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttct 447  Q
    |||||| || ||||||||||||||| |||||||||||||   ||||| ||||||| |  | |||||||||||   |||||| |||||| ||||||| | |    
T  11217 tgttgtaaaaaatggacttcaataattcttcatttcctcgactagcataaagtgactccatagatggaagggactgcaatgcaagtttagggacatctgt 11316  T
Q  448 tatatcaaactctaaaagttgtggtagcatctcta 482  Q
    |||| | ||||  ||||| ||| ||||||||||||    
T  11317 tatagctaacttcaaaagctgttgtagcatctcta 11351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 10783 - 10741
Alignment:
Q  482 aacatcctttccggactgtttgggtgcaatgacttctcttcaa 524  Q
    ||||||||| || |||||||||||||| |||||||||||||||    
T  10783 aacatccttgccagactgtttgggtgccatgacttctcttcaa 10741  T

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Target: scaffold0133; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 6430 - 6381
Alignment:
Q  475 catctctaacatcctttccggactgtttgggtgcaatgacttctcttcaa 524  Q
    ||||| ||| |||||| |||||||| |||||||| |||||||||||||||    
T  6430 catctataaaatccttgccggactggttgggtgccatgacttctcttcaa 6381  T

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Target: scaffold0133; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 15993 - 15952
Alignment:
Q  483 acatcctttccggactgtttgggtgcaatgacttctcttcaa 524  Q
    |||||||| || |||||||||||||| |||||||||||||||    
T  15993 acatccttgccagactgtttgggtgccatgacttctcttcaa 15952  T

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Target: scaffold0133; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 10883 - 10919
Alignment:
Q  197 agggaagttagattggtcatgttatgtggaaaaacaa 233  Q
    |||||||||||| || |||||||||||||||||||||    
T  10883 agggaagttagactgttcatgttatgtggaaaaacaa 10919  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 362 - 482
Target Start/End: Complemental strand, 38941138 - 38941018
Alignment:
Q  362 gacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttcttatatcaaactcta 461  Q
    ||||||||||| ||||||||||||||  ||||| |||  || | ||||||||||||||   |||||| |||||||||||||||||||||||| |||| ||    
T  38941138 gacttcaataattcttcatttcctccactagcaaaaaacgactcaacagatggaagggactgcaatgcaagtttggggacatttcttatatctaacttta 38941039  T
Q  462 aaagttgtggtagcatctcta 482  Q
    |||||||||||||||||||||    
T  38941038 aaagttgtggtagcatctcta 38941018  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 482
Target Start/End: Complemental strand, 7055065 - 7054931
Alignment:
Q  348 tgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttct 447  Q
    |||||| || ||||||||||||||||||||||||||||||   |||||||||||| | || |||||||||||  |||||||| ||||| ||||||| | |    
T  7055065 tgttgtaaaaaatggacttcaataactcttcatttcctccacgagcagaaagtgactcaatagatggaagggacggcaatgtgagtttagggacatctgt 7054966  T
Q  448 tatatcaaactctaaaagttgtggtagcatctcta 482  Q
    || ||| || |||||||||||  ||| ||||||||    
T  7054965 tagatctaagtctaaaagttggtgtaacatctcta 7054931  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 38943182 - 38943254
Alignment:
Q  196 aagggaagttagattggtcatgttatgtggaaaaacaaactgtggacaatcatggatataaagtgtcttaaga 268  Q
    ||||||||||||| || ||||||||||||||||||| ||| ||||||||| |||||| | |||||||| ||||    
T  38943182 aagggaagttagactgctcatgttatgtggaaaaacgaacagtggacaatgatggattttaagtgtctcaaga 38943254  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 38941492 - 38941421
Alignment:
Q  197 agggaagttagattggtcatgttatgtggaaaaacaaactgtggacaatcatggatataaagtgtcttaaga 268  Q
    |||||||| ||| || ||||||||||||||||||| ||||||||||||| || ||||  |||||||| ||||    
T  38941492 agggaagtcagactgttcatgttatgtggaaaaacgaactgtggacaataattgatacgaagtgtctcaaga 38941421  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 524
Target Start/End: Original strand, 7055512 - 7055556
Alignment:
Q  480 ctaacatcctttccggactgtttgggtgcaatgacttctcttcaa 524  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||    
T  7055512 ctaacatccttgccggactggttgggtgccatgacttctcttcaa 7055556  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 535
Target Start/End: Complemental strand, 38943070 - 38943019
Alignment:
Q  484 catcctttccggactgtttgggtgcaatgacttctcttcaaaatttacaaat 535  Q
    ||||||| |||||||| |||||||| ||||||||||||||||  ||||||||    
T  38943070 catccttgccggactggttgggtgccatgacttctcttcaaagattacaaat 38943019  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 7055415 - 7055369
Alignment:
Q  196 aagggaagttagattggtcatgttatgtggaaaaacaaactgtggac 242  Q
    ||||||||||||| || |||||||||| |||||||| ||||||||||    
T  7055415 aagggaagttagactgttcatgttatgcggaaaaacgaactgtggac 7055369  T

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Target: scaffold0256 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 482
Target Start/End: Original strand, 7522 - 7656
Alignment:
Q  348 tgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttct 447  Q
    |||||| || || |||||||||||| ||||||||||||||  || |||||||||| |  |||||||||||||   |||||| |||||| ||||||| | |    
T  7522 tgttgtaaaaaaaggacttcaataattcttcatttcctccactaacagaaagtgactccacagatggaagggactgcaatgcaagtttagggacatctgt 7621  T
Q  448 tatatcaaactctaaaagttgtggtagcatctcta 482  Q
    |||||| ||||  ||||||||||||||||||||||    
T  7622 tatatctaacttcaaaagttgtggtagcatctcta 7656  T

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Target: scaffold0256; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 7089 - 7040
Alignment:
Q  475 catctctaacatcctttccggactgtttgggtgcaatgacttctcttcaa 524  Q
    ||||||||| |||||| ||||||||||||||||| |||||||| ||||||    
T  7089 catctctaaaatccttgccggactgtttgggtgccatgacttcacttcaa 7040  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 348 - 442
Target Start/End: Original strand, 13376454 - 13376548
Alignment:
Q  348 tgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaaggggtggcaatgtaagtttggggaca 442  Q
    ||||||||| ||||||||||||||||||||||||||||||  || || ||||  | | ||||||||||||||  | ||||| |||||| ||||||    
T  13376454 tgttgttaaaaatggacttcaataactcttcatttcctccggtaacaaaaaggaactcaacagatggaagggacgacaatgcaagttttgggaca 13376548  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 477 - 525
Target Start/End: Complemental strand, 13376010 - 13375962
Alignment:
Q  477 tctctaacatcctttccggactgtttgggtgcaatgacttctcttcaaa 525  Q
    |||||||||||||| || ||||| |||||||| |||||| |||||||||    
T  13376010 tctctaacatccttgccagactggttgggtgccatgactactcttcaaa 13375962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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