View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9261_low_21 (Length: 502)
Name: NF9261_low_21
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Complemental strand, 21055730 - 21055260
Alignment:
| Q |
9 |
atgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatacttnnnnnnnngtctgtcttctaaagc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21055730 |
atgagataattccaccttttttggtgtatttttcaatgctttactgtgagtagtaaaatgcctcattaaaatacttaaaaaaaagtctgtcttctaaagc |
21055631 |
T |
|
| Q |
109 |
atcaaaaaggagcattttattagatacatcctttcaaaaagtatatatgtactttccctcccatgttattcctcatctaaacacacaatggttaagttta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21055630 |
atcaaaaaggagcattttattagatacatcctttcaaaaagtatatatgtactttccctcccatgttattcctcatctaaacacacaacggttaagttta |
21055531 |
T |
|
| Q |
209 |
tgaatgatgacataagataatttacagtttagttgatagttttgaatctggggatcaatgtatgttgatagaggatatcttgttgcagataaaggtggta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21055530 |
tgaatgatgacataagataatttacagtttagttgatagttttgaatctggggatcaatgtatgttgatagaggatatcttgttgcagataaaggtggta |
21055431 |
T |
|
| Q |
309 |
ggagcataaacaaattgaagaaaaatgaatctatcaacag------aaaagcagagtacaaaaacaaccaaaatggatcttattgaagactaattcacc- |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
21055430 |
ggagcataaacaaattgaagaaaaatgaatctatcaacagaaaaagaaaaaaaaagtacaaaaacagccaaaatggatcttagtgaagactgattcacca |
21055331 |
T |
|
| Q |
402 |
aatcaatggtctgaaaaaggcccaactataaagcaatgctttgaagctaacgaagaagcacaagtatatttg |
473 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
21055330 |
aatcaatggtctggaaaagg-ccaactataaagcaatgctttaaagctaatgaagaagcataagtatatttg |
21055260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 473
Target Start/End: Original strand, 26363629 - 26364117
Alignment:
| Q |
13 |
gataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatacttnnnnnnnn--gtctgtcttctaaagcat |
110 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||| ||| |
|
|
| T |
26363629 |
gataattccaccttttttggtggatttttcaattctttattgtgagtagtaaaatgcctcattaaaatacttcaaattttaagtctgccttgtaaaacat |
26363728 |
T |
|
| Q |
111 |
caaaaa-ggagcattttattagatacatcctttcaaaa-agtatatatgtactttccctcccatgttattcctcatctaaacacacaatggttaagttta |
208 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||| | ||||| |||||||||| |||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
26363729 |
aaaaaaaggagcattttattagagatatcctttcaaaacaaaatatacgtactttcccacccatgttattcctcatctaaacacacagaggttgagttta |
26363828 |
T |
|
| Q |
209 |
tgaatgatgacataagataatttacagtttagttgatagttttgaatctggggatc-aatgtatgtt-gatagaggatatcttg-------------ttg |
293 |
Q |
| |
|
||||||||||| |||| || ||||||| ||||||||||||||||| || || | |||||||||| ||||||||||| |||| ||| |
|
|
| T |
26363829 |
tgaatgatgacctaaggaaaattacagtcgagttgatagttttgaatttgtagaaccaatgtatgtttgatagaggataacttgaggatatcttctgttg |
26363928 |
T |
|
| Q |
294 |
cagataaaggtggt---------aggagcataaacaaattgaagaaaaatgaatctatcaacagaaaagcagagtacaaaaacaaccaaaatggatctta |
384 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26363929 |
cagataaaggtggtagcactggtaggagcataaacaaattgaagaaaaatgaatctattaacataaaagcagaatacaaaaacaaccaaaatggatctta |
26364028 |
T |
|
| Q |
385 |
ttgaagactaattcaccaatcaatggtctgaaaaaggcccaactataaagcaatgctttgaagctaacgaagaagcacaagtatatttg |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26364029 |
ttgaagactaattcaccaatcaatggtctgaaaaaggcccaactataaagcaatgctttgaagctaacgaagaagcacaagtatatttg |
26364117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 13 - 473
Target Start/End: Original strand, 26366184 - 26366665
Alignment:
| Q |
13 |
gataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatacttnnnnnnnn--gtctgtcttctaaagcat |
110 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||| | || ||| |||| ||| |
|
|
| T |
26366184 |
gataattccactctttttggtggatatttcaattctttattgtgagtagtaaaatgcctcattaaaatacttgaaattttaagactaacttgtaaaacat |
26366283 |
T |
|
| Q |
111 |
caaaaaggagcattttattagatacatc----ctttcaaaaagtata---tatgtactttccctcccatgttattcctcatctaaacacacaatggttaa |
203 |
Q |
| |
|
||||||||||||||||||||| | ||| |||| ||||| | | ||||| |||||||||||||||||||||||||||||||||| | |||| | |
|
|
| T |
26366284 |
aaaaaaggagcattttattagagatatctatccttttaaaaataaaaatgtatgtgctttccctcccatgttattcctcatctaaacaca--acggttga |
26366381 |
T |
|
| Q |
204 |
gtttatgaatgatgacataagataatttacagtttagttgatagttttgaatctggggatc-aatgtatgttgatagaggatatctt------------- |
289 |
Q |
| |
|
||| ||| ||| | || |||| || |||||||| ||||||| ||||||||||| ||| | |||| ||||| | |||||||| ||| |
|
|
| T |
26366382 |
gttgatggatggtaacctaaggaaagttacagttgagttgattgttttgaatctatggaaccaatgcatgttaacagaggataccttaaagatatctttt |
26366481 |
T |
|
| Q |
290 |
gttgcagataaaggtggtaggagcataaacaaattgaagaaaaatgaatctatcaacagaaaagcagagtacaaaaacaaccaaaatggatcttattgaa |
389 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
26366482 |
gttgcagataaaggtggtagaagcataaacaaattgaagaaaaatgaaactttcaacagaaaagcaaagtac-aaaacaaccaaaatggatcttattgaa |
26366580 |
T |
|
| Q |
390 |
gactaattcacc-aatcaatggtctgaaaaaggcccaactataaagcaatgctttgaagctaacgaagaagcacaagtatatttg |
473 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
26366581 |
gactaattcaccaaatcaatggtctggaaaaggccaaactataaagcaatgctttaaagctaacgaagaagcatgagtatatttg |
26366665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University