View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_23 (Length: 483)
Name: NF9261_low_23
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_23 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 199 - 483
Target Start/End: Original strand, 36990405 - 36990686
Alignment:
| Q |
199 |
tttaacttacatattcacctggctaagagagtttcttattaattgatttatttactatatgcagaagagacagcttcattacccacagagcattctgtga |
298 |
Q |
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| T |
36990405 |
tttaacttacat--tcacctggcta-gagagtttcttattaattgatttatttactatatgcagaagagacagcttcattacccacagagcattctgtga |
36990501 |
T |
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| Q |
299 |
cgcattagctgaagagaacaacaaagccaacgaaggagtactatcaaacttgcaacaccaaccaatctcaaatctcgtttcttcattacctttaaacccc |
398 |
Q |
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| T |
36990502 |
cgcattggctgaagagaacaacaaagccaacgaaggagtactatcaaacttgcaacaccaaccaatctcaaatctcgtttcttcattacctttaaacccc |
36990601 |
T |
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| Q |
399 |
attaataaccctcaaattggtggaactgtatcagaattcaacaaccattcagatcacaagctcccattatcatcccctcatgaac |
483 |
Q |
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| T |
36990602 |
attaataaccctcaaatttgtggaactgtatcagaattcaacaaccattcagatcacaagctcccattatcatcccctcatgaac |
36990686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 36990219 - 36990408
Alignment:
| Q |
1 |
agaaagtgttcgttgagtataattataggtcactacgtgtatattattaaatttatttggctcagtcaaaga-----ttccaacatatgtat-------- |
87 |
Q |
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| T |
36990219 |
agaaagtgttcattgagtacaattataggtcactacgtgtatattattaaatttatttggctcagtcaaataaagtgttcctacatatgtatgtatagcc |
36990318 |
T |
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| Q |
88 |
-aggtgtataaaaaacattagtcttta----ttatttcataatacccatgcaggtcctcatgtcatgaacaattatatatttcatattta |
172 |
Q |
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| T |
36990319 |
taggtgtataaaaaacattagtctttatttattatttcataatacccatgcaggtcctcatgtcatgagcaattatatatttcatattta |
36990408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 44150204 - 44150142
Alignment:
| Q |
259 |
gcagaagagacagcttcattacccacagagcattctgtgacgcattagctgaagagaacaaca |
321 |
Q |
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| T |
44150204 |
gcaggagagacagttttataacccacagagcattctgtgatgcattaactgaagaaaacaaca |
44150142 |
T |
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