View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9261_low_26 (Length: 475)
Name: NF9261_low_26
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9261_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 5041307 - 5040846
Alignment:
| Q |
1 |
agcagagaggatcaaggccaccaaaatgtgatacaaggtgcagattctgtggtcactgtgaggctattcaagttccagcaaatcctagagcaatgactgg |
100 |
Q |
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| T |
5041307 |
agcagataggatcaaggccaccaaaatgtgatacaaggtgcagattctgtggtcactgtgaggctattcaagttccagaaaatcctagagcaatgactgg |
5041208 |
T |
|
| Q |
101 |
aaagatcaacccttcaactctgtctacagtagcttatgctaggaggcaagataattccaactataaaccaatgagttggaaatgcaaatgtggggacatt |
200 |
Q |
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| T |
5041207 |
aaagatcaacccttcaactctgtctacagtagcttatgctaggaggcaagataattccaactataaacctatgagttggaaatgcaaatgtggggacatt |
5041108 |
T |
|
| Q |
201 |
attttcaacccttgatttgatttgttccataatgtagttcatttagataatcaaggatgttaatcaatttgttaactctgtatatctatatatttttagc |
300 |
Q |
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| T |
5041107 |
attttcaacccttgatttgatttgttccataatgtagttcatttagataatcaaggatgttaatcaatttgttaactctgtatatctatatatttttagc |
5041008 |
T |
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| Q |
301 |
tcttccctatttttacctagctactagtgtaaagtgatggtcatttgattgaaactttgtttaaatttgaagttatgttgcttaatagacgagtataata |
400 |
Q |
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| T |
5041007 |
tcttccctatttttacctagctactagtgtaaagtgatggtcatttgattgaaactttgtttaaatttgaagttatggtgcttaatagacgagtataatg |
5040908 |
T |
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| Q |
401 |
aagatttgattatatcttgaa---gatttcgtc------taactattttcaaatgagtgcta |
453 |
Q |
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| T |
5040907 |
aagatatgattatatcttgaaaaggatttcgtctaataataactattttcaaatgagtgcta |
5040846 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 40342028 - 40342088
Alignment:
| Q |
151 |
ataattccaactataaaccaatgagttggaaatgcaaatgtggggacattattttcaaccc |
211 |
Q |
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| T |
40342028 |
ataattccaattacaagcccatgagttggaaatgcaaatgtgggaacctcattttcaaccc |
40342088 |
T |
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