View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9261_low_28 (Length: 469)

Name: NF9261_low_28
Description: NF9261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9261_low_28
NF9261_low_28
[»] chr5 (1 HSPs)
chr5 (1-463)||(39252459-39252911)
[»] chr1 (3 HSPs)
chr1 (132-185)||(35201495-35201548)
chr1 (132-185)||(35202375-35202428)
chr1 (137-185)||(37643843-37643891)
[»] chr3 (2 HSPs)
chr3 (134-188)||(47007765-47007819)
chr3 (134-185)||(47007023-47007074)
[»] chr2 (4 HSPs)
chr2 (143-187)||(29308399-29308443)
chr2 (143-187)||(29309102-29309146)
chr2 (132-187)||(4161336-4161390)
chr2 (143-187)||(29283910-29283954)
[»] chr8 (2 HSPs)
chr8 (132-185)||(33520893-33520946)
chr8 (143-185)||(33520216-33520258)
[»] chr6 (1 HSPs)
chr6 (132-187)||(4275070-4275125)
[»] scaffold0143 (1 HSPs)
scaffold0143 (143-185)||(1625-1667)


Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 39252459 - 39252911
Alignment:
Q  1 cagtgttgcaaatgtattaacagcaatagacgagtgctcatcacgtgaaagtcagattatgagggagtattattattagagaaagttagagtttaattcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39252459 cagtgttgcaaatgtattaacagcaatagacgagtgctcatcacgtgaaagtcagattatgagggagtattactattagagaaagttagagtttaattcc 39252558  T
Q  101 gataggctaatgtgtaaactgccttacgctgttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactcaatgaggagatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39252559 gataggctaatgtgtaaactgccttacgctgttatgaaaggtaattgagatggccatttcctcccaaaatggagaggatctgcactcaatgaggagatag 39252658  T
Q  201 tcaacccataaaaataggaaatatctatgttttaatttaggggcgtctatataatgaaagtgagtgaatgaattgagagaaatcggtggtaactaacgat 300  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252659 tcaacccataaaaataggaaatatctatgttttaatt----------tatataatgaaagtgagtgaatgaattgagagaaatcggtggtaactaacgat 39252748  T
Q  301 ggcggcatcaccatccttttgtcatagaaggagcagatcatcgaattttcaaacaagaatgatggcagaagcatgttcatatttaccagagtttaccaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252749 ggcggcatcaccatccttttgtcatagaaggagcagatcatcgaattttcaaacaagaatgatggcagaagcatgttcatatttaccagagtttaccaga 39252848  T
Q  401 ggagttataggaatgcatcttgaaattccacaacgcagacaatcacactttgatgtccatctc 463  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  39252849 ggagttatgggaatgcatcttgaaattccacaacgcagacaatcacactttgaagtccgtctc 39252911  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 35201548 - 35201495
Alignment:
Q  132 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 185  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  35201548 ttatgaaaggaaattgagatggccatttactccccaaatggagaggatctgcac 35201495  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 35202375 - 35202428
Alignment:
Q  132 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 185  Q
    |||||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  35202375 ttatgaaaggaaattgagatggccatttcctcaccaaatggagaggatctgcac 35202428  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 37643843 - 37643891
Alignment:
Q  137 aaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 185  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||| |||||    
T  37643843 aaaggaaattgagattgtcattttctccctaaatggagaggatatgcac 37643891  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 47007765 - 47007819
Alignment:
Q  134 atgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactca 188  Q
    ||||| || ||||||||| || |||||||||||||||||||||||||||||||||    
T  47007765 atgaatggaaattgagattgcaatttcctccctaaatggagaggatctgcactca 47007819  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 47007074 - 47007023
Alignment:
Q  134 atgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 185  Q
    ||||| || ||||||||| || ||||||||||||||||||||||||||||||    
T  47007074 atgaatggaaattgagattgcaatttcctccctaaatggagaggatctgcac 47007023  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 29308399 - 29308443
Alignment:
Q  143 aattgagatggccatttcctccctaaatggagaggatctgcactc 187  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  29308399 aattgagattgcaatttcctccctaaatggagaggatctgcactc 29308443  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 29309146 - 29309102
Alignment:
Q  143 aattgagatggccatttcctccctaaatggagaggatctgcactc 187  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  29309146 aattgagattgcaatttcctccctaaatggagaggatctgcactc 29309102  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 4161336 - 4161390
Alignment:
Q  132 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactc 187  Q
    |||||||||| ||||||||| || ||||| |||| |||||||||||||||||||||    
T  4161336 ttatgaaaggaaattgagattgcaatttc-tccccaaatggagaggatctgcactc 4161390  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 29283910 - 29283954
Alignment:
Q  143 aattgagatggccatttcctccctaaatggagaggatctgcactc 187  Q
    |||| |||| || |||||||||||||||||||||||||| |||||    
T  29283910 aatttagattgcaatttcctccctaaatggagaggatctacactc 29283954  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 33520893 - 33520946
Alignment:
Q  132 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 185  Q
    |||| ||||| ||||| ||||||||||||||| | |||||||||||||||||||    
T  33520893 ttattaaaggaaattgtgatggccatttcctcaccaaatggagaggatctgcac 33520946  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 33520258 - 33520216
Alignment:
Q  143 aattgagatggccatttcctccctaaatggagaggatctgcac 185  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  33520258 aattgagatggccatttcctcataaaatggagaggatctgcac 33520216  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 4275125 - 4275070
Alignment:
Q  132 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactc 187  Q
    ||||||| || ||||||||| ||||||| || ||||||||||||||||||| ||||    
T  4275125 ttatgaatggaaattgagattgccattttctacctaaatggagaggatctgtactc 4275070  T

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Target: scaffold0143 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 1667 - 1625
Alignment:
Q  143 aattgagatggccatttcctccctaaatggagaggatctgcac 185  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  1667 aattgagatggccatttcctcataaaatggagaggatctgcac 1625  T

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